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Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.
Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD. Li XY, et al. Among authors: celniker se. PLoS Biol. 2008 Feb;6(2):e27. doi: 10.1371/journal.pbio.0060027. PLoS Biol. 2008. PMID: 18271625 Free PMC article.
A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.
Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J. Fowlkes CC, et al. Cell. 2008 Apr 18;133(2):364-74. doi: 10.1016/j.cell.2008.01.053. Cell. 2008. PMID: 18423206 Free article.
Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.
Ho MC, Johnsen H, Goetz SE, Schiller BJ, Bae E, Tran DA, Shur AS, Allen JM, Rau C, Bender W, Fisher WW, Celniker SE, Drewell RA. Ho MC, et al. Among authors: celniker se. PLoS Genet. 2009 Nov;5(11):e1000709. doi: 10.1371/journal.pgen.1000709. Epub 2009 Nov 6. PLoS Genet. 2009. PMID: 19893611 Free PMC article.
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development.
Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA. Thomas S, et al. Among authors: celniker se. Genome Biol. 2011;12(5):R43. doi: 10.1186/gb-2011-12-5-r43. Epub 2011 May 11. Genome Biol. 2011. PMID: 21569360 Free PMC article.
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila.
Fisher WW, Li JJ, Hammonds AS, Brown JB, Pfeiffer BD, Weiszmann R, MacArthur S, Thomas S, Stamatoyannopoulos JA, Eisen MB, Bickel PJ, Biggin MD, Celniker SE. Fisher WW, et al. Among authors: celniker se. Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21330-5. doi: 10.1073/pnas.1209589110. Epub 2012 Dec 10. Proc Natl Acad Sci U S A. 2012. PMID: 23236164 Free PMC article.
Long-read, whole-genome shotgun sequence data for five model organisms.
Kim KE, Peluso P, Babayan P, Yeadon PJ, Yu C, Fisher WW, Chin CS, Rapicavoli NA, Rank DR, Li J, Catcheside DE, Celniker SE, Phillippy AM, Bergman CM, Landolin JM. Kim KE, et al. Among authors: celniker se. Sci Data. 2014 Nov 25;1:140045. doi: 10.1038/sdata.2014.45. eCollection 2014. Sci Data. 2014. PMID: 25977796 Free PMC article.
The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.
Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. Kudron MM, et al. Among authors: celniker se. Genetics. 2018 Mar;208(3):937-949. doi: 10.1534/genetics.117.300657. Epub 2017 Dec 28. Genetics. 2018. PMID: 29284660 Free PMC article.
137 results