Spatiotemporal mosaic self-patterning of pluripotent stem cells using CRISPR interference

Elife. 2018 Oct 9:7:e36045. doi: 10.7554/eLife.36045.

Abstract

Morphogenesis involves interactions of asymmetric cell populations to form complex multicellular patterns and structures comprised of distinct cell types. However, current methods to model morphogenic events lack control over cell-type co-emergence and offer little capability to selectively perturb specific cell subpopulations. Our in vitro system interrogates cell-cell interactions and multicellular organization within human induced pluripotent stem cell (hiPSC) colonies. We examined effects of induced mosaic knockdown of molecular regulators of cortical tension (ROCK1) and cell-cell adhesion (CDH1) with CRISPR interference. Mosaic knockdown of ROCK1 or CDH1 resulted in differential patterning within hiPSC colonies due to cellular self-organization, while retaining an epithelial pluripotent phenotype. Knockdown induction stimulates a transient wave of differential gene expression within the mixed populations that stabilized in coordination with observed self-organization. Mosaic patterning enables genetic interrogation of emergent multicellular properties, which can facilitate better understanding of the molecular pathways that regulate symmetry-breaking during morphogenesis.

Keywords: bio-engineering; developmental biology; human; morphogenesis; pluripotent stem cells; regenerative medicine; stem cells.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Antigens, CD / genetics*
  • CRISPR-Cas Systems / genetics
  • Cadherins / genetics*
  • Cell Communication / genetics
  • Cell Differentiation / genetics*
  • Cell Lineage / genetics
  • Gene Knockdown Techniques
  • Humans
  • Induced Pluripotent Stem Cells / cytology*
  • Induced Pluripotent Stem Cells / metabolism
  • Morphogenesis / genetics
  • rho-Associated Kinases / genetics*

Substances

  • Antigens, CD
  • CDH1 protein, human
  • Cadherins
  • ROCK1 protein, human
  • rho-Associated Kinases