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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1996 1
2001 1
2002 3
2003 8
2004 14
2005 16
2006 24
2007 36
2008 82
2009 139
2010 255
2011 354
2012 470
2013 622
2014 744
2015 788
2016 839
2017 780
2018 827
2019 946
2020 1071
2021 1269
2022 101
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8,537 results
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Page 1
Methods for ChIP-seq analysis: A practical workflow and advanced applications.
Nakato R, Sakata T. Nakato R, et al. Methods. 2021 Mar;187:44-53. doi: 10.1016/j.ymeth.2020.03.005. Epub 2020 Mar 30. Methods. 2021. PMID: 32240773 Free article. Review.
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a central method in epigenomic research. ...In this review, we first present a typical ChIP-seq analysis workflow, from quality assessment to chromatin-state
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a central method in epigenomic researc
ChIP-Seq Data Analysis to Define Transcriptional Regulatory Networks.
Pavesi G. Pavesi G. Adv Biochem Eng Biotechnol. 2017;160:1-14. doi: 10.1007/10_2016_43. Adv Biochem Eng Biotechnol. 2017. PMID: 28070596 Free article. Review.
Fundamental advances in this direction have been made possible by the introduction of experimental techniques such as Chromatin Immunoprecipitation, which, coupled with next-generation sequencing technologies (ChIP-Seq), permit the genome-wide i …
Fundamental advances in this direction have been made possible by the introduction of experimental techniques such as Chromatin Im
RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism.
Muhammad II, Kong SL, Akmar Abdullah SN, Munusamy U. Muhammad II, et al. Int J Mol Sci. 2019 Dec 25;21(1):167. doi: 10.3390/ijms21010167. Int J Mol Sci. 2019. PMID: 31881735 Free PMC article. Review.
In this paper, we discuss the integration of transcriptional factor studies through RNA sequencing (RNA-seq) and Chromatin Immunoprecipitation sequencing (ChIP-seq). We show how the data from ChIP-seq can strengthen i …
In this paper, we discuss the integration of transcriptional factor studies through RNA sequencing (RNA-seq) and Chromatin
Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
Mundade R, Ozer HG, Wei H, Prabhu L, Lu T. Mundade R, et al. Cell Cycle. 2014;13(18):2847-52. doi: 10.4161/15384101.2014.949201. Cell Cycle. 2014. PMID: 25486472 Free PMC article. Review.
In recent years, the combination of ChIP with second generation DNA-sequencing technology (ChIP-seq) allows precise genomic functional assay. ...Furthermore, we also describe the ChIP-seq data analysis workflow and a perspective for the e …
In recent years, the combination of ChIP with second generation DNA-sequencing technology (ChIP-seq) allows prec …
FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues.
Font-Tello A, Kesten N, Xie Y, Taing L, Varešlija D, Young LS, Hamid AA, Van Allen EM, Sweeney CJ, Gjini E, Lako A, Hodi FS, Bellmunt J, Brown M, Cejas P, Long HW. Font-Tello A, et al. Nat Protoc. 2020 Aug;15(8):2503-2518. doi: 10.1038/s41596-020-0340-6. Epub 2020 Jun 26. Nat Protoc. 2020. PMID: 32591768
Fixed-tissue ChIP-seq for H3K27 acetylation (H3K27ac) profiling (FiTAc-seq) is an epigenetic method for profiling active enhancers and promoters in formalin-fixed, paraffin-embedded (FFPE) tissues. We previously developed a modified ChIP-seq pro …
Fixed-tissue ChIP-seq for H3K27 acetylation (H3K27ac) profiling (FiTAc-seq) is an epigenetic method for profiling activ …
Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.
Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A. Ranzoni AM, et al. Cell Stem Cell. 2021 Mar 4;28(3):472-487.e7. doi: 10.1016/j.stem.2020.11.015. Epub 2020 Dec 21. Cell Stem Cell. 2021. PMID: 33352111 Free PMC article.
Regulation of hematopoiesis during human development remains poorly defined. Here we applied single-cell RNA sequencing (scRNA-seq) and single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq) to over 8,000 human immunophen …
Regulation of hematopoiesis during human development remains poorly defined. Here we applied single-cell RNA sequencing (scRNA-seq
ChIP-Seq Assays from Mammalian Cartilage and Chondrocytes.
Yamakawa A, Hojo H, Ohba S. Yamakawa A, et al. Methods Mol Biol. 2021;2245:167-178. doi: 10.1007/978-1-0716-1119-7_12. Methods Mol Biol. 2021. PMID: 33315202
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful tool to identify binding profiles of transcriptional regulators and chromatin regulators as well as histone modification patterns in a genome-wide manner. Ch
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful tool to identify binding pr
Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors.
Tu X, Mejía-Guerra MK, Valdes Franco JA, Tzeng D, Chu PY, Shen W, Wei Y, Dai X, Li P, Buckler ES, Zhong S. Tu X, et al. Nat Commun. 2020 Oct 9;11(1):5089. doi: 10.1038/s41467-020-18832-8. Nat Commun. 2020. PMID: 33037196 Free PMC article.
However, TF binding studies in plants are too few in number to produce a general picture of this complex network. In this study, we use large-scale ChIP-seq to reconstruct it in the maize leaf, and train machine-learning models to predict TF binding and co-localizat …
However, TF binding studies in plants are too few in number to produce a general picture of this complex network. In this study, we use larg …
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors.
Schmidl C, Rendeiro AF, Sheffield NC, Bock C. Schmidl C, et al. Nat Methods. 2015 Oct;12(10):963-965. doi: 10.1038/nmeth.3542. Epub 2015 Aug 17. Nat Methods. 2015. PMID: 26280331 Free PMC article.
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is widely used to map histone marks and transcription factor binding throughout the genome. Here we present ChIPmentation, a method that combines chromatin immunoprecipita
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is widely used to map histone marks and t
Novel ChIP-seq simulating program with superior versatility: isChIP.
Subkhankulova T, Naumenko F, Tolmachov OE, Orlov YL. Subkhankulova T, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa352. doi: 10.1093/bib/bbaa352. Brief Bioinform. 2021. PMID: 33320934
Chromatin immunoprecipitation followed by next-generation sequencing (ChIP-seq) is recognized as an extremely powerful tool to study the interaction of numerous transcription factors and other chromatin-associated proteins with DNA. ...We
Chromatin immunoprecipitation followed by next-generation sequencing (ChIP-seq) is recognized as an extre
8,537 results