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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1996 1
2001 1
2002 3
2003 8
2004 14
2005 16
2006 24
2007 37
2008 82
2009 139
2010 255
2011 354
2012 470
2013 622
2014 744
2015 788
2016 841
2017 782
2018 827
2019 953
2020 1085
2021 1318
2022 1225
2023 1154
2024 251

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10,927 results

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Page 1
Methods for ChIP-seq analysis: A practical workflow and advanced applications.
Nakato R, Sakata T. Nakato R, et al. Methods. 2021 Mar;187:44-53. doi: 10.1016/j.ymeth.2020.03.005. Epub 2020 Mar 30. Methods. 2021. PMID: 32240773 Free article. Review.
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a central method in epigenomic research. ...In this review, we first present a typical ChIP-seq analysis workflow, from quality assessment to chromatin-state
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a central method in epigenomic researc
Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis.
Ranzoni AM, Tangherloni A, Berest I, Riva SG, Myers B, Strzelecka PM, Xu J, Panada E, Mohorianu I, Zaugg JB, Cvejic A. Ranzoni AM, et al. Cell Stem Cell. 2021 Mar 4;28(3):472-487.e7. doi: 10.1016/j.stem.2020.11.015. Epub 2020 Dec 21. Cell Stem Cell. 2021. PMID: 33352111 Free PMC article.
Regulation of hematopoiesis during human development remains poorly defined. Here we applied single-cell RNA sequencing (scRNA-seq) and single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq) to over 8,000 human immunophen …
Regulation of hematopoiesis during human development remains poorly defined. Here we applied single-cell RNA sequencing (scRNA-seq
Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors.
Tu X, Mejía-Guerra MK, Valdes Franco JA, Tzeng D, Chu PY, Shen W, Wei Y, Dai X, Li P, Buckler ES, Zhong S. Tu X, et al. Nat Commun. 2020 Oct 9;11(1):5089. doi: 10.1038/s41467-020-18832-8. Nat Commun. 2020. PMID: 33037196 Free PMC article.
However, TF binding studies in plants are too few in number to produce a general picture of this complex network. In this study, we use large-scale ChIP-seq to reconstruct it in the maize leaf, and train machine-learning models to predict TF binding and co-localizat …
However, TF binding studies in plants are too few in number to produce a general picture of this complex network. In this study, we use larg …
Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq).
Yu M, Juric I, Abnousi A, Hu M, Ren B. Yu M, et al. Methods Mol Biol. 2021;2351:181-199. doi: 10.1007/978-1-0716-1597-3_10. Methods Mol Biol. 2021. PMID: 34382190
Proximity ligation-assisted ChIP-Seq (PLAC-Seq), also known as HiChIP, is a method to detect and quantify chromatin contacts anchored at genomic regions bound by specific proteins or histone modifications. ...PLAC-Seq is able to identify long-ra …
Proximity ligation-assisted ChIP-Seq (PLAC-Seq), also known as HiChIP, is a method to detect and quantify chromatin
Bibliometric review of ATAC-Seq and its application in gene expression.
Luo L, Gribskov M, Wang S. Luo L, et al. Brief Bioinform. 2022 May 13;23(3):bbac061. doi: 10.1093/bib/bbac061. Brief Bioinform. 2022. PMID: 35255493 Free PMC article. Review.
An assay for transposase-accessible chromatin using sequencing (ATAC-seq), which uses Tn5 transposase to sequence protein-free binding regions of the genome, can be combined with chromatin immunoprecipitation coupled with deep sequencing
An assay for transposase-accessible chromatin using sequencing (ATAC-seq), which uses Tn5 transposase to sequence prote …
ChIP-Seq Assays from Mammalian Cartilage and Chondrocytes.
Yamakawa A, Hojo H, Ohba S. Yamakawa A, et al. Methods Mol Biol. 2021;2245:167-178. doi: 10.1007/978-1-0716-1119-7_12. Methods Mol Biol. 2021. PMID: 33315202
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful tool to identify binding profiles of transcriptional regulators and chromatin regulators as well as histone modification patterns in a genome-wide manner. Ch
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a powerful tool to identify binding pr
Genome-wide global identification of NRF2 binding sites in A549 non-small cell lung cancer cells by ChIP-Seq reveals NRF2 regulation of genes involved in focal adhesion pathways.
Namani A, Liu K, Wang S, Zhou X, Liao Y, Wang H, Wang XJ, Tang X. Namani A, et al. Aging (Albany NY). 2019 Dec 28;11(24):12600-12623. doi: 10.18632/aging.102590. Epub 2019 Dec 28. Aging (Albany NY). 2019. PMID: 31884422 Free PMC article.
We investigated the global NRF2 genomic binding sites using the high-throughput ChIP-Seq technique in KEAP1 (Kelch-like ECH-associated protein 1)-mutated A549 (NSCLC) cells. We next carried out an integrated analysis of the ChIP-Seq data with transcrip …
We investigated the global NRF2 genomic binding sites using the high-throughput ChIP-Seq technique in KEAP1 (Kelch-like ECH-as …
ChIP-Seq Occupancy Mapping of the Archaeal Transcription Machinery.
Blombach F, Smollett KL, Werner F. Blombach F, et al. Methods Mol Biol. 2022;2522:209-222. doi: 10.1007/978-1-0716-2445-6_13. Methods Mol Biol. 2022. PMID: 36125752
The primary method to determine genome-wide occupancies is chromatin immunoprecipitation combined with deep sequencing (ChIP-seq). ...Studies on archaeal transcription brought insight into the evolution of transcription machineries and the unive …
The primary method to determine genome-wide occupancies is chromatin immunoprecipitation combined with deep sequencing
Novel ChIP-seq simulating program with superior versatility: isChIP.
Subkhankulova T, Naumenko F, Tolmachov OE, Orlov YL. Subkhankulova T, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa352. doi: 10.1093/bib/bbaa352. Brief Bioinform. 2021. PMID: 33320934
Chromatin immunoprecipitation followed by next-generation sequencing (ChIP-seq) is recognized as an extremely powerful tool to study the interaction of numerous transcription factors and other chromatin-associated proteins with DNA. ...We
Chromatin immunoprecipitation followed by next-generation sequencing (ChIP-seq) is recognized as an extre
Going low to reach high: Small-scale ChIP-seq maps new terrain.
Fosslie M, Manaf A, Lerdrup M, Hansen K, Gilfillan GD, Dahl JA. Fosslie M, et al. Wiley Interdiscip Rev Syst Biol Med. 2020 Jan;12(1):e1465. doi: 10.1002/wsbm.1465. Epub 2019 Sep 3. Wiley Interdiscip Rev Syst Biol Med. 2020. PMID: 31478357 Review.
Importantly, recent technological advances that couple ChIP with whole-genome high-throughput sequencing (ChIP-seq) now allow the mapping of chromatin factors throughout the genome. However, the requirement for large amounts of ChIP-se
Importantly, recent technological advances that couple ChIP with whole-genome high-throughput sequencing (ChIP-seq
10,927 results
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