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iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.
Lopéz-Blanco JR, Chacón P. Lopéz-Blanco JR, et al. Among authors: chacon p. J Struct Biol. 2013 Nov;184(2):261-70. doi: 10.1016/j.jsb.2013.08.010. Epub 2013 Aug 30. J Struct Biol. 2013. PMID: 23999189
Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.
Louder RK, He Y, López-Blanco JR, Fang J, Chacón P, Nogales E. Louder RK, et al. Among authors: chacon p. Nature. 2016 Mar 31;531(7596):604-9. doi: 10.1038/nature17394. Epub 2016 Mar 23. Nature. 2016. PMID: 27007846 Free PMC article.
Effective GTP-replacing FtsZ inhibitors and antibacterial mechanism of action.
Artola M, Ruiz-Avila LB, Vergoñós A, Huecas S, Araujo-Bazán L, Martín-Fontecha M, Vázquez-Villa H, Turrado C, Ramírez-Aportela E, Hoegl A, Nodwell M, Barasoain I, Chacón P, Sieber SA, Andreu JM, López-Rodríguez ML. Artola M, et al. Among authors: chacon p. ACS Chem Biol. 2015 Mar 20;10(3):834-43. doi: 10.1021/cb500974d. Epub 2014 Dec 30. ACS Chem Biol. 2015. PMID: 25486266
FRODOCK 2.0: fast protein-protein docking server.
Ramírez-Aportela E, López-Blanco JR, Chacón P. Ramírez-Aportela E, et al. Among authors: chacon p. Bioinformatics. 2016 Aug 1;32(15):2386-8. doi: 10.1093/bioinformatics/btw141. Epub 2016 Mar 12. Bioinformatics. 2016. PMID: 27153583
RCD+: Fast loop modeling server.
López-Blanco JR, Canosa-Valls AJ, Li Y, Chacón P. López-Blanco JR, et al. Among authors: chacon p. Nucleic Acids Res. 2016 Jul 8;44(W1):W395-400. doi: 10.1093/nar/gkw395. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27151199 Free PMC article.
New generation of elastic network models.
López-Blanco JR, Chacón P. López-Blanco JR, et al. Among authors: chacon p. Curr Opin Struct Biol. 2016 Apr;37:46-53. doi: 10.1016/j.sbi.2015.11.013. Epub 2015 Dec 21. Curr Opin Struct Biol. 2016. PMID: 26716577 Review.
iMODS: internal coordinates normal mode analysis server.
López-Blanco JR, Aliaga JI, Quintana-Ortí ES, Chacón P. López-Blanco JR, et al. Among authors: chacon p. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W271-6. doi: 10.1093/nar/gku339. Epub 2014 Apr 25. Nucleic Acids Res. 2014. PMID: 24771341 Free PMC article.
DrugScorePPI knowledge-based potentials used as scoring and objective function in protein-protein docking.
Krüger DM, Ignacio Garzón J, Chacón P, Gohlke H. Krüger DM, et al. Among authors: chacon p. PLoS One. 2014 Feb 21;9(2):e89466. doi: 10.1371/journal.pone.0089466. eCollection 2014. PLoS One. 2014. PMID: 24586799 Free PMC article.
iMod: multipurpose normal mode analysis in internal coordinates.
Lopéz-Blanco JR, Garzón JI, Chacón P. Lopéz-Blanco JR, et al. Among authors: chacon p. Bioinformatics. 2011 Oct 15;27(20):2843-50. doi: 10.1093/bioinformatics/btr497. Epub 2011 Aug 27. Bioinformatics. 2011. PMID: 21873636
Spinor product computations for protein conformations.
Chys P, Chacón P. Chys P, et al. Among authors: chacon p. J Comput Chem. 2012 Aug 5;33(21):1717-29. doi: 10.1002/jcc.23002. Epub 2012 May 8. J Comput Chem. 2012. PMID: 22565650
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