Chaichoompu K - Search Results

1

A different view on fine-scale population structure in Western African populations.

Chaichoompu K, Abegaz F, Cavadas B, Fernandes V, Müller-Myhsok B, Pereira L, Van Steen K. Chaichoompu K, et al. Hum Genet. 2020 Jan;139(1):45-59. doi: 10.1007/s00439-019-02069-7. Epub 2019 Oct 19. Hum Genet. 2020. PMID: 31630246 Free PMC article.

2

Principals about principal components in statistical genetics.

Abegaz F, Chaichoompu K, Génin E, Fardo DW, König IR, Mahachie John JM, Van Steen K. Abegaz F, et al. Among authors: chaichoompu k. Brief Bioinform. 2019 Nov 27;20(6):2200-2216. doi: 10.1093/bib/bby081. Brief Bioinform. 2019. PMID: 30219892 Review.

3

IPCAPS: an R package for iterative pruning to capture population structure.

Chaichoompu K, Abegaz F, Tongsima S, Shaw PJ, Sakuntabhai A, Pereira L, Van Steen K. Chaichoompu K, et al. Source Code Biol Med. 2019 Mar 20;14:2. doi: 10.1186/s13029-019-0072-6. eCollection 2019. Source Code Biol Med. 2019. PMID: 30936940 Free PMC article.

4

Fine-scale subpopulation detection via an SNP-based unsupervised method: A case study on the 1000 Genomes Project resources.

Chaichoompu K, Wilantho A, Wangkumhang P, Tongsima S, Cavadas B, Pereira L, Van Steen K. Chaichoompu K, et al. Pac Symp Biocomput. 2023;28:245-256. Pac Symp Biocomput. 2023. PMID: 36540981 Free article.

5

Insight into the peopling of Mainland Southeast Asia from Thai population genetic structure.

Wangkumhang P, Shaw PJ, Chaichoompu K, Ngamphiw C, Assawamakin A, Nuinoon M, Sripichai O, Svasti S, Fucharoen S, Praphanphoj V, Tongsima S. Wangkumhang P, et al. Among authors: chaichoompu k. PLoS One. 2013 Nov 4;8(11):e79522. doi: 10.1371/journal.pone.0079522. eCollection 2013. PLoS One. 2013. PMID: 24223962 Free PMC article.

6

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations.

Wangkumhang P, Chaichoompu K, Ngamphiw C, Ruangrit U, Chanprasert J, Assawamakin A, Tongsima S. Wangkumhang P, et al. Among authors: chaichoompu k. BMC Genomics. 2007 Aug 14;8:275. doi: 10.1186/1471-2164-8-275. BMC Genomics. 2007. PMID: 17697334 Free PMC article.

7

Speedup bioinformatics applications on multicore-based processor using vectorizing and multithreading strategies.

Chaichoompu K, Kittitornkun S, Tongsima S. Chaichoompu K, et al. Bioinformation. 2007 Dec 30;2(5):182-4. doi: 10.6026/97320630002182. Bioinformation. 2007. PMID: 18305826 Free PMC article.

8

Iterative pruning PCA improves resolution of highly structured populations.

Intarapanich A, Shaw PJ, Assawamakin A, Wangkumhang P, Ngamphiw C, Chaichoompu K, Piriyapongsa J, Tongsima S. Intarapanich A, et al. Among authors: chaichoompu k. BMC Bioinformatics. 2009 Nov 23;10:382. doi: 10.1186/1471-2105-10-382. BMC Bioinformatics. 2009. PMID: 19930644 Free PMC article.

9

Benchmarking atlas-level data integration in single-cell genomics.

Luecken MD, Büttner M, Chaichoompu K, Danese A, Interlandi M, Mueller MF, Strobl DC, Zappia L, Dugas M, Colomé-Tatché M, Theis FJ. Luecken MD, et al. Among authors: chaichoompu k. Nat Methods. 2022 Jan;19(1):41-50. doi: 10.1038/s41592-021-01336-8. Epub 2021 Dec 23. Nat Methods. 2022. PMID: 34949812 Free PMC article.

10

EpiScanpy: integrated single-cell epigenomic analysis.

Danese A, Richter ML, Chaichoompu K, Fischer DS, Theis FJ, Colomé-Tatché M. Danese A, et al. Among authors: chaichoompu k. Nat Commun. 2021 Sep 1;12(1):5228. doi: 10.1038/s41467-021-25131-3. Nat Commun. 2021. PMID: 34471111 Free PMC article.

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