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The interrelationships of side-chain and main-chain conformations in proteins.
Chakrabarti P, Pal D. Chakrabarti P, et al. Prog Biophys Mol Biol. 2001;76(1-2):1-102. doi: 10.1016/s0079-6107(01)00005-0. Prog Biophys Mol Biol. 2001. PMID: 11389934 Review.
Flexibility in the N-terminal actin-binding domain: clues from in silico mutations and molecular dynamics.
Chakravarty D, Chakraborti S, Chakrabarti P. Chakravarty D, et al. Among authors: chakrabarti p. Proteins. 2015 Apr;83(4):696-710. doi: 10.1002/prot.24767. Epub 2015 Feb 5. Proteins. 2015. PMID: 25620004
Interresidue contacts in proteins and protein-protein interfaces and their use in characterizing the homodimeric interface.
Saha RP, Bahadur RP, Chakrabarti P. Saha RP, et al. Among authors: chakrabarti p. J Proteome Res. 2005 Sep-Oct;4(5):1600-9. doi: 10.1021/pr050118k. J Proteome Res. 2005. PMID: 16212412
A novel secondary structure based on fused five-membered rings motif.
Dhar J, Kishore R, Chakrabarti P. Dhar J, et al. Among authors: chakrabarti p. Sci Rep. 2016 Aug 11;6:31483. doi: 10.1038/srep31483. Sci Rep. 2016. PMID: 27511362 Free PMC article.
Structural motif, topi and its role in protein function and fibrillation.
Dhar J, Chakrabarti P. Dhar J, et al. Among authors: chakrabarti p. Mol Omics. 2018 Aug 6;14(4):247-256. doi: 10.1039/c8mo00048d. Mol Omics. 2018. PMID: 29896602
Actin-curcumin interaction: insights into the mechanism of actin polymerization inhibition.
Dhar G, Chakravarty D, Hazra J, Dhar J, Poddar A, Pal M, Chakrabarti P, Surolia A, Bhattacharyya B. Dhar G, et al. Among authors: chakrabarti p. Biochemistry. 2015 Feb 3;54(4):1132-43. doi: 10.1021/bi5014408. Epub 2015 Jan 17. Biochemistry. 2015. PMID: 25564154
Stable and potent analogues derived from the modification of the dicarbonyl moiety of curcumin.
Chakraborti S, Dhar G, Dwivedi V, Das A, Poddar A, Chakraborti G, Basu G, Chakrabarti P, Surolia A, Bhattacharyya B. Chakraborti S, et al. Among authors: chakrabarti p. Biochemistry. 2013 Oct 22;52(42):7449-60. doi: 10.1021/bi400734e. Epub 2013 Oct 10. Biochemistry. 2013. PMID: 24063255
Reassessing buried surface areas in protein-protein complexes.
Chakravarty D, Guharoy M, Robert CH, Chakrabarti P, Janin J. Chakravarty D, et al. Among authors: chakrabarti p. Protein Sci. 2013 Oct;22(10):1453-7. doi: 10.1002/pro.2330. Epub 2013 Sep 4. Protein Sci. 2013. PMID: 23934783 Free PMC article.
Domain analysis of a groundnut calcium-dependent protein kinase: nuclear localization sequence in the junction domain is coupled with nonconsensus calcium binding domains.
Raichaudhuri A, Bhattacharyya R, Chaudhuri S, Chakrabarti P, Dasgupta M. Raichaudhuri A, et al. Among authors: chakrabarti p. J Biol Chem. 2006 Apr 14;281(15):10399-409. doi: 10.1074/jbc.M511001200. Epub 2006 Feb 7. J Biol Chem. 2006. PMID: 16464867
ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces.
Saha RP, Bahadur RP, Pal A, Mandal S, Chakrabarti P. Saha RP, et al. Among authors: chakrabarti p. BMC Struct Biol. 2006 Jun 7;6:11. doi: 10.1186/1472-6807-6-11. BMC Struct Biol. 2006. PMID: 16759379 Free PMC article.
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