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84 results
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Signatures of adaptation and symbiosis in genomes and transcriptomes of Symbiodinium.
González-Pech RA, Ragan MA, Chan CX. González-Pech RA, et al. Among authors: chan cx. Sci Rep. 2017 Nov 3;7(1):15021. doi: 10.1038/s41598-017-15029-w. Sci Rep. 2017. PMID: 29101370 Free PMC article.
Clustering evolving proteins into homologous families.
Chan CX, Mahbob M, Ragan MA. Chan CX, et al. BMC Bioinformatics. 2013 Apr 8;14:120. doi: 10.1186/1471-2105-14-120. BMC Bioinformatics. 2013. PMID: 23566217 Free PMC article.
Inferring phylogenies of evolving sequences without multiple sequence alignment.
Chan CX, Bernard G, Poirion O, Hogan JM, Ragan MA. Chan CX, et al. Sci Rep. 2014 Sep 30;4:6504. doi: 10.1038/srep06504. Sci Rep. 2014. PMID: 25266120 Free PMC article.
Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer.
Bernard G, Chan CX, Ragan MA. Bernard G, et al. Among authors: chan cx. Sci Rep. 2016 Jul 1;6:28970. doi: 10.1038/srep28970. Sci Rep. 2016. PMID: 27363362 Free PMC article.
Recapitulating phylogenies using k-mers: from trees to networks.
Bernard G, Ragan MA, Chan CX. Bernard G, et al. Among authors: chan cx. F1000Res. 2016 Nov 29;5:2789. doi: 10.12688/f1000research.10225.2. eCollection 2016. F1000Res. 2016. PMID: 28105314 Free PMC article.
[No authors listed] [No authors listed] PMID: 28111606
The Algal Revolution.
Brodie J, Chan CX, De Clerck O, Cock JM, Coelho SM, Gachon C, Grossman AR, Mock T, Raven JA, Smith AG, Yoon HS, Bhattacharya D. Brodie J, et al. Among authors: chan cx. Trends Plant Sci. 2017 Aug;22(8):726-738. doi: 10.1016/j.tplants.2017.05.005. Epub 2017 Jun 10. Trends Plant Sci. 2017. PMID: 28610890 Review.
Biotic interactions as drivers of algal origin and evolution.
Brodie J, Ball SG, Bouget FY, Chan CX, De Clerck O, Cock JM, Gachon C, Grossman AR, Mock T, Raven JA, Saha M, Smith AG, Vardi A, Yoon HS, Bhattacharya D. Brodie J, et al. Among authors: chan cx. New Phytol. 2017 Nov;216(3):670-681. doi: 10.1111/nph.14760. Epub 2017 Aug 31. New Phytol. 2017. PMID: 28857164 Review.
Deciphering the nature of the coral-Chromera association.
Mohamed AR, Cumbo VR, Harii S, Shinzato C, Chan CX, Ragan MA, Satoh N, Ball EE, Miller DJ. Mohamed AR, et al. Among authors: chan cx. ISME J. 2018 Mar;12(3):776-790. doi: 10.1038/s41396-017-0005-9. Epub 2018 Jan 10. ISME J. 2018. PMID: 29321691 Free PMC article.
Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids.
Jackson C, Knoll AH, Chan CX, Verbruggen H. Jackson C, et al. Among authors: chan cx. Sci Rep. 2018 Jan 24;8(1):1523. doi: 10.1038/s41598-017-18805-w. Sci Rep. 2018. PMID: 29367699 Free PMC article.
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