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106 results
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GtRNAdb: a database of transfer RNA genes detected in genomic sequence.
Chan PP, Lowe TM. Chan PP, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7. doi: 10.1093/nar/gkn787. Epub 2008 Nov 4. Nucleic Acids Res. 2009. PMID: 18984615 Free PMC article.
The UCSC Archaeal Genome Browser: 2012 update.
Chan PP, Holmes AD, Smith AM, Tran D, Lowe TM. Chan PP, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D646-52. doi: 10.1093/nar/gkr990. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080555 Free PMC article.
Modeling the Thermoproteaceae RNase P RNA.
Chan PP, Brown JW, Lowe TM. Chan PP, et al. RNA Biol. 2012 Sep;9(9):1155-60. doi: 10.4161/rna.21502. Epub 2012 Sep 1. RNA Biol. 2012. PMID: 23018780 Free PMC article.
Complete genome sequence of Pyrobaculum oguniense.
Bernick DL, Karplus K, Lui LM, Coker JK, Murphy JN, Chan PP, Cozen AE, Lowe TM. Bernick DL, et al. Among authors: chan pp. Stand Genomic Sci. 2012 Jul 30;6(3):336-45. doi: 10.4056/sigs.2645906. Epub 2012 Jul 20. Stand Genomic Sci. 2012. PMID: 23407329 Free PMC article.
Discovery of permuted and recently split transfer RNAs in Archaea.
Chan PP, Cozen AE, Lowe TM. Chan PP, et al. Genome Biol. 2011;12(4):R38. doi: 10.1186/gb-2011-12-4-r38. Epub 2011 Apr 13. Genome Biol. 2011. PMID: 21489296 Free PMC article.
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.
Chan PP, Lowe TM. Chan PP, et al. Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1. Methods Mol Biol. 2019. PMID: 31020551 Free PMC article.
tRNAviz: explore and visualize tRNA sequence features.
Lin BY, Chan PP, Lowe TM. Lin BY, et al. Among authors: chan pp. Nucleic Acids Res. 2019 Jul 2;47(W1):W542-W547. doi: 10.1093/nar/gkz438. Nucleic Acids Res. 2019. PMID: 31127306 Free PMC article.
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes.
Chan PP, Lowe TM. Chan PP, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D184-9. doi: 10.1093/nar/gkv1309. Epub 2015 Dec 15. Nucleic Acids Res. 2016. PMID: 26673694 Free PMC article.
Reclassification of Thermoproteus neutrophilus Stetter and Zillig 1989 as Pyrobaculum neutrophilum comb. nov. based on phylogenetic analysis.
Chan PP, Cozen AE, Lowe TM. Chan PP, et al. Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):751-754. doi: 10.1099/ijs.0.043091-0. Epub 2012 May 4. Int J Syst Evol Microbiol. 2013. PMID: 22561593
IscR is essential for yersinia pseudotuberculosis type III secretion and virulence.
Miller HK, Kwuan L, Schwiesow L, Bernick DL, Mettert E, Ramirez HA, Ragle JM, Chan PP, Kiley PJ, Lowe TM, Auerbuch V. Miller HK, et al. Among authors: chan pp. PLoS Pathog. 2014 Jun 12;10(6):e1004194. doi: 10.1371/journal.ppat.1004194. eCollection 2014 Jun. PLoS Pathog. 2014. PMID: 24945271 Free PMC article.
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