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PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.
Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL. Chang JM, et al. Proteins. 2008 Aug;72(2):693-710. doi: 10.1002/prot.21944. Proteins. 2008. PMID: 18260102
Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing.
Su EC, Chang JM, Cheng CW, Sung TY, Hsu WL. Su EC, et al. Among authors: chang jm. BMC Bioinformatics. 2012;13 Suppl 17(Suppl 17):S13. doi: 10.1186/1471-2105-13-S17-S13. Epub 2012 Dec 13. BMC Bioinformatics. 2012. PMID: 23282098 Free PMC article.
Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
Lin HN, Notredame C, Chang JM, Sung TY, Hsu WL. Lin HN, et al. Among authors: chang jm. PLoS One. 2011;6(12):e27872. doi: 10.1371/journal.pone.0027872. Epub 2011 Dec 2. PLoS One. 2011. PMID: 22163274 Free PMC article.
GANA--a genetic algorithm for NMR backbone resonance assignment.
Lin HN, Wu KP, Chang JM, Sung TY, Hsu WL. Lin HN, et al. Among authors: chang jm. Nucleic Acids Res. 2005 Aug 10;33(14):4593-601. doi: 10.1093/nar/gki768. Print 2005. Nucleic Acids Res. 2005. PMID: 16093550 Free PMC article.
HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach.
Wu KP, Lin HN, Chang JM, Sung TY, Hsu WL. Wu KP, et al. Among authors: chang jm. Nucleic Acids Res. 2004 Sep 24;32(17):5059-65. doi: 10.1093/nar/gkh836. Print 2004. Nucleic Acids Res. 2004. PMID: 15448186 Free PMC article.
HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
Lin HN, Chang JM, Wu KP, Sung TY, Hsu WL. Lin HN, et al. Among authors: chang jm. Bioinformatics. 2005 Aug 1;21(15):3227-33. doi: 10.1093/bioinformatics/bti524. Epub 2005 Jun 2. Bioinformatics. 2005. PMID: 15932901
RIBRA--an error-tolerant algorithm for the NMR backbone assignment problem.
Wu KP, Chang JM, Chen JB, Chang CF, Wu WJ, Huang TH, Sung TY, Hsu WL. Wu KP, et al. Among authors: chang jm, chang cf. J Comput Biol. 2006 Mar;13(2):229-44. doi: 10.1089/cmb.2006.13.229. J Comput Biol. 2006. PMID: 16597237
Osthole improves an accelerated focal segmental glomerulosclerosis model in the early stage by activating the Nrf2 antioxidant pathway and subsequently inhibiting NF-κB-mediated COX-2 expression and apoptosis.
Yang SM, Chan YL, Hua KF, Chang JM, Chen HL, Tsai YJ, Hsu YJ, Chao LK, Feng-Ling Y, Tsai YL, Wu SH, Wang YF, Tsai CL, Chen A, Ka SM. Yang SM, et al. Among authors: chang jm. Free Radic Biol Med. 2014 Aug;73:260-9. doi: 10.1016/j.freeradbiomed.2014.05.009. Epub 2014 May 22. Free Radic Biol Med. 2014. PMID: 24858719
Epigallocatechin-3-gallate prevents lupus nephritis development in mice via enhancing the Nrf2 antioxidant pathway and inhibiting NLRP3 inflammasome activation.
Tsai PY, Ka SM, Chang JM, Chen HC, Shui HA, Li CY, Hua KF, Chang WL, Huang JJ, Yang SS, Chen A. Tsai PY, et al. Among authors: chang jm, chang wl. Free Radic Biol Med. 2011 Aug 1;51(3):744-54. doi: 10.1016/j.freeradbiomed.2011.05.016. Epub 2011 May 23. Free Radic Biol Med. 2011. PMID: 21641991
7-Dehydrocholesterol (7-DHC), But Not Cholesterol, Causes Suppression of Canonical TGF-β Signaling and Is Likely Involved in the Development of Atherosclerotic Cardiovascular Disease (ASCVD).
Huang SS, Liu IH, Chen CL, Chang JM, Johnson FE, Huang JS. Huang SS, et al. Among authors: chang jm. J Cell Biochem. 2017 Jun;118(6):1387-1400. doi: 10.1002/jcb.25797. Epub 2016 Dec 13. J Cell Biochem. 2017. PMID: 27862220 Free PMC article.
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