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CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III.
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E. Deltcheva E, et al. Nature. 2011 Mar 31;471(7340):602-7. doi: 10.1038/nature09886. Nature. 2011. PMID: 21455174 Free PMC article.
Regulatory small RNAs from the 3' regions of bacterial mRNAs.
Miyakoshi M, Chao Y, Vogel J. Miyakoshi M, et al. Curr Opin Microbiol. 2015 Apr;24:132-9. doi: 10.1016/j.mib.2015.01.013. Epub 2015 Feb 9. Curr Opin Microbiol. 2015. PMID: 25677420 Review.
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions.
Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J. Westermann AJ, et al. Nature. 2016 Jan 28;529(7587):496-501. doi: 10.1038/nature16547. Epub 2016 Jan 20. Nature. 2016. PMID: 26789254
In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.
Chao Y, Li L, Girodat D, Förstner KU, Said N, Corcoran C, Śmiga M, Papenfort K, Reinhardt R, Wieden HJ, Luisi BF, Vogel J. Chao Y, et al. Mol Cell. 2017 Jan 5;65(1):39-51. doi: 10.1016/j.molcel.2016.11.002. Mol Cell. 2017. PMID: 28061332 Free PMC article.
Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L, Förstner KU, Chao Y. Li L, et al. Methods Mol Biol. 2018;1751:171-182. doi: 10.1007/978-1-4939-7710-9_12. Methods Mol Biol. 2018. PMID: 29508297
Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing.
Saadeh B, Caswell CC, Chao Y, Berta P, Wattam AR, Roop RM 2nd, O'Callaghan D. Saadeh B, et al. J Bacteriol. 2015 Nov 9;198(3):427-35. doi: 10.1128/JB.00711-15. Print 2016 Feb 1. J Bacteriol. 2015. PMID: 26553849 Free PMC article.
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