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Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.
Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. Ramus C, et al. Among authors: chaoui k. J Proteomics. 2016 Jan 30;132:51-62. doi: 10.1016/j.jprot.2015.11.011. Epub 2015 Nov 14. J Proteomics. 2016. PMID: 26585461
Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.
Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. Ramus C, et al. Among authors: chaoui k. Data Brief. 2015 Dec 17;6:286-94. doi: 10.1016/j.dib.2015.11.063. eCollection 2016 Mar. Data Brief. 2015. PMID: 26862574 Free PMC article.
Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.
Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C. Vandenbrouck Y, et al. Among authors: chaoui k. J Proteome Res. 2016 Nov 4;15(11):3998-4019. doi: 10.1021/acs.jproteome.6b00400. Epub 2016 Aug 23. J Proteome Res. 2016. PMID: 27444420 Free article.
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics.
Van Puyvelde B, Daled S, Willems S, Gabriels R, Gonzalez de Peredo A, Chaoui K, Mouton-Barbosa E, Bouyssié D, Boonen K, Hughes CJ, Gethings LA, Perez-Riverol Y, Bloomfield N, Tate S, Schiltz O, Martens L, Deforce D, Dhaenens M. Van Puyvelde B, et al. Among authors: chaoui k. Sci Data. 2022 Mar 30;9(1):126. doi: 10.1038/s41597-022-01216-6. Sci Data. 2022. PMID: 35354825 Free PMC article.
SILAC-based proteomic profiling of the human MDA-MB-231 metastatic breast cancer cell line in response to the two antitumoral lactoferrin isoforms: the secreted lactoferrin and the intracellular delta-lactoferrin.
Hoedt E, Chaoui K, Huvent I, Mariller C, Monsarrat B, Burlet-Schiltz O, Pierce A. Hoedt E, et al. Among authors: chaoui k. PLoS One. 2014 Aug 12;9(8):e104563. doi: 10.1371/journal.pone.0104563. eCollection 2014. PLoS One. 2014. PMID: 25116916 Free PMC article.
37 results