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Lack of evidence for cospeciation between retroelements and their hosts.
Kossida S, Harvey PH, de A Zanotto PM, Charleston MA. Kossida S, et al. J Mol Evol. 2000 Feb;50(2):194-201. doi: 10.1007/s002399910021. J Mol Evol. 2000. PMID: 10684353
Neighbor-joining uses the optimal weight for net divergence.
Charleston MA, Hendy MD, Penny D. Charleston MA, et al. Mol Phylogenet Evol. 1993 Mar;2(1):6-12. doi: 10.1006/mpev.1993.1002. Mol Phylogenet Evol. 1993. PMID: 8081548
A cophylogenetic perspective of RNA-virus evolution.
Jackson AP, Charleston MA. Jackson AP, et al. Mol Biol Evol. 2004 Jan;21(1):45-57. doi: 10.1093/molbev/msg232. Epub 2003 Aug 29. Mol Biol Evol. 2004. PMID: 12949128
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