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DBD--taxonomically broad transcription factor predictions: new content and functionality.
Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA. Wilson D, et al. Among authors: charoensawan v. Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. doi: 10.1093/nar/gkm964. Epub 2007 Dec 11. Nucleic Acids Res. 2008. PMID: 18073188 Free PMC article.
MANORAA (Mapping Analogous Nuclei Onto Residue And Affinity) for identifying protein-ligand fragment interaction, pathways and SNPs.
Tanramluk D, Narupiyakul L, Akavipat R, Gong S, Charoensawan V. Tanramluk D, et al. Among authors: charoensawan v. Nucleic Acids Res. 2016 Jul 8;44(W1):W514-21. doi: 10.1093/nar/gkw314. Epub 2016 Apr 29. Nucleic Acids Res. 2016. PMID: 27131358 Free PMC article.
DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes.
Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA. Charoensawan V, et al. Mol Cell. 2012 Jul 27;47(2):183-92. doi: 10.1016/j.molcel.2012.06.028. Mol Cell. 2012. PMID: 22841002 Free PMC article.
Genomic repertoires of DNA-binding transcription factors across the tree of life.
Charoensawan V, Wilson D, Teichmann SA. Charoensawan V, et al. Nucleic Acids Res. 2010 Nov;38(21):7364-77. doi: 10.1093/nar/gkq617. Epub 2010 Jul 30. Nucleic Acids Res. 2010. PMID: 20675356 Free PMC article. Review.
Lineage-specific expansion of DNA-binding transcription factor families.
Charoensawan V, Wilson D, Teichmann SA. Charoensawan V, et al. Trends Genet. 2010 Sep;26(9):388-93. doi: 10.1016/j.tig.2010.06.004. Epub 2010 Jul 31. Trends Genet. 2010. PMID: 20675012 Free PMC article.
Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis.
Cortijo S, Charoensawan V, Brestovitsky A, Buning R, Ravarani C, Rhodes D, van Noort J, Jaeger KE, Wigge PA. Cortijo S, et al. Among authors: charoensawan v. Mol Plant. 2017 Oct 9;10(10):1258-1273. doi: 10.1016/j.molp.2017.08.014. Epub 2017 Sep 8. Mol Plant. 2017. PMID: 28893714 Free PMC article.
The impact of gene expression regulation on evolution of extracellular signaling pathways.
Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA. Charoensawan V, et al. Mol Cell Proteomics. 2010 Dec;9(12):2666-77. doi: 10.1074/mcp.M110.003020. Epub 2010 Oct 8. Mol Cell Proteomics. 2010. PMID: 20935258 Free PMC article.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Ezer D, Shepherd SJK, Brestovitsky A, Dickinson P, Cortijo S, Charoensawan V, Box MS, Biswas S, Jaeger KE, Wigge PA. Ezer D, et al. Among authors: charoensawan v. Plant Physiol. 2017 Oct;175(2):628-640. doi: 10.1104/pp.17.01086. Epub 2017 Sep 1. Plant Physiol. 2017. PMID: 28864470 Free PMC article.
"Hit-and-run": Transcription factors get caught in the act.
Charoensawan V, Martinho C, Wigge PA. Charoensawan V, et al. Bioessays. 2015 Jul;37(7):748-54. doi: 10.1002/bies.201400186. Epub 2015 May 21. Bioessays. 2015. PMID: 26010075 Review.
RNA sequencing reveals two major classes of gene expression levels in metazoan cells.
Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, Teichmann SA. Hebenstreit D, et al. Among authors: charoensawan v. Mol Syst Biol. 2011 Jun 7;7:497. doi: 10.1038/msb.2011.28. Mol Syst Biol. 2011. PMID: 21654674 Free PMC article.
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