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A dedicated computational approach for the identification of archaeal H/ACA sRNAs.
Muller S, Charpentier B, Branlant C, Leclerc F. Muller S, et al. Methods Enzymol. 2007;425:355-87. doi: 10.1016/S0076-6879(07)25015-3. Methods Enzymol. 2007. PMID: 17673091 Review.
Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs.
Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant C. Muller S, et al. Nucleic Acids Res. 2008 May;36(8):2459-75. doi: 10.1093/nar/gkn077. Epub 2008 Feb 27. Nucleic Acids Res. 2008. PMID: 18304947 Free PMC article.
Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities.
Muller S, Fourmann JB, Loegler C, Charpentier B, Branlant C. Muller S, et al. Nucleic Acids Res. 2007;35(16):5610-24. doi: 10.1093/nar/gkm606. Epub 2007 Aug 17. Nucleic Acids Res. 2007. PMID: 17704128 Free PMC article.
Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity.
Manival X, Charron C, Fourmann JB, Godard F, Charpentier B, Branlant C. Manival X, et al. Nucleic Acids Res. 2006 Feb 2;34(3):826-39. doi: 10.1093/nar/gkj482. Print 2006. Nucleic Acids Res. 2006. PMID: 16456033 Free PMC article.
Characterization of the molecular mechanisms involved in the differential production of erythrose-4-phosphate dehydrogenase, 3-phosphoglycerate kinase and class II fructose-1,6-bisphosphate aldolase in Escherichia coli.
Bardey V, Vallet C, Robas N, Charpentier B, Thouvenot B, Mougin A, Hajnsdorf E, Régnier P, Springer M, Branlant C. Bardey V, et al. Mol Microbiol. 2005 Sep;57(5):1265-87. doi: 10.1111/j.1365-2958.2005.04762.x. Mol Microbiol. 2005. PMID: 16102000
A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA.
Marmier-Gourrier N, Cléry A, Senty-Ségault V, Charpentier B, Schlotter F, Leclerc F, Fournier R, Branlant C. Marmier-Gourrier N, et al. RNA. 2003 Jul;9(7):821-38. doi: 10.1261/rna.2130503. RNA. 2003. PMID: 12810916 Free PMC article.
U3 snoRNA contains two conserved pairs of boxes, C'/D and B/C, which were both expected to bind the 15.5-kD/Snu13 protein. Only binding to the B/C motif was experimentally demonstrated. ...Due to a highly reduced stem I (1 bp), the K-turn structure is not formed in …
U3 snoRNA contains two conserved pairs of boxes, C'/D and B/C, which were both expected to bind the 15.5-kD/Snu13 protein. Only bindi …
Purification, crystallization and preliminary X-ray diffraction data of L7Ae sRNP core protein from Pyrococcus abyssii.
Charron C, Manival X, Charpentier B, Branlant C, Aubry A. Charron C, et al. Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):122-4. doi: 10.1107/s090744490302239x. Epub 2003 Dec 18. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 14684904
Crystals belong to the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 70.7, b = 112.9, c = 34.8 A. There are two monomers of MW 14 200 Da per asymmetric unit and the packing density V(M) is 2.45 A(3) Da(-1). ...
Crystals belong to the orthorhombic space group P2(1)2(1)2, with unit-cell parameters a = 70.7, b = 112.9, c = 34.8 A. There are two …
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