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Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Wang W, Mauleon R, Hu Z, Chebotarov D, Tai S, Wu Z, Li M, Zheng T, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu J, Sun C, Fu B, Zhang H, Gao Y, Zhao X, Shen F, Cui X, Yu H, Li Z, Chen M, Detras J, Zhou Y, Zhang X, Zhao Y, Kudrna D, Wang C, Li R, Jia B, Lu J, He X, Dong Z, Xu J, Li Y, Wang M, Shi J, Li J, Zhang D, Lee S, Hu W, Poliakov A, Dubchak I, Ulat VJ, Borja FN, Mendoza JR, Ali J, Li J, Gao Q, Niu Y, Yue Z, Naredo MEB, Talag J, Wang X, Li J, Fang X, Yin Y, Glaszmann JC, Zhang J, Li J, Hamilton RS, Wing RA, Ruan J, Zhang G, Wei C, Alexandrov N, McNally KL, Li Z, Leung H. Wang W, et al. Among authors: chebotarov d. Nature. 2018 May;557(7703):43-49. doi: 10.1038/s41586-018-0063-9. Epub 2018 Apr 25. Nature. 2018. PMID: 29695866 Free PMC article.
SNP-Seek database of SNPs derived from 3000 rice genomes.
Alexandrov N, Tai S, Wang W, Mansueto L, Palis K, Fuentes RR, Ulat VJ, Chebotarov D, Zhang G, Li Z, Mauleon R, Hamilton RS, McNally KL. Alexandrov N, et al. Among authors: chebotarov d. Nucleic Acids Res. 2015 Jan;43(Database issue):D1023-7. doi: 10.1093/nar/gku1039. Epub 2014 Nov 27. Nucleic Acids Res. 2015. PMID: 25429973 Free PMC article.
Rice SNP-seek database update: new SNPs, indels, and queries.
Mansueto L, Fuentes RR, Borja FN, Detras J, Abriol-Santos JM, Chebotarov D, Sanciangco M, Palis K, Copetti D, Poliakov A, Dubchak I, Solovyev V, Wing RA, Hamilton RS, Mauleon R, McNally KL, Alexandrov N. Mansueto L, et al. Among authors: chebotarov d. Nucleic Acids Res. 2017 Jan 4;45(D1):D1075-D1081. doi: 10.1093/nar/gkw1135. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899667 Free PMC article.
An imputation platform to enhance integration of rice genetic resources.
Wang DR, Agosto-Pérez FJ, Chebotarov D, Shi Y, Marchini J, Fitzgerald M, McNally KL, Alexandrov N, McCouch SR. Wang DR, et al. Among authors: chebotarov d. Nat Commun. 2018 Aug 29;9(1):3519. doi: 10.1038/s41467-018-05538-1. Nat Commun. 2018. PMID: 30158584 Free PMC article.
Structural variants in 3000 rice genomes.
Fuentes RR, Chebotarov D, Duitama J, Smith S, De la Hoz JF, Mohiyuddin M, Wing RA, McNally KL, Tatarinova T, Grigoriev A, Mauleon R, Alexandrov N. Fuentes RR, et al. Among authors: chebotarov d. Genome Res. 2019 May;29(5):870-880. doi: 10.1101/gr.241240.118. Epub 2019 Apr 16. Genome Res. 2019. PMID: 30992303 Free PMC article.
A platinum standard pan-genome resource that represents the population structure of Asian rice.
Zhou Y, Chebotarov D, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez LJ, Franco N, Alexandrov N, Hamilton NRS, Leung H, Mauleon R, Lorieux M, Zuccolo A, McNally K, Zhang J, Wing RA. Zhou Y, et al. Among authors: chebotarov d. Sci Data. 2020 Apr 7;7(1):113. doi: 10.1038/s41597-020-0438-2. Sci Data. 2020. PMID: 32265447 Free PMC article.
State of ex situ conservation of landrace groups of 25 major crops.
Ramirez-Villegas J, Khoury CK, Achicanoy HA, Diaz MV, Mendez AC, Sosa CC, Kehel Z, Guarino L, Abberton M, Aunario J, Awar BA, Alarcon JC, Amri A, Anglin NL, Azevedo V, Aziz K, Capilit GL, Chavez O, Chebotarov D, Costich DE, Debouck DG, Ellis D, Falalou H, Fiu A, Ghanem ME, Giovannini P, Goungoulou AJ, Gueye B, Hobyb AE, Jamnadass R, Jones CS, Kpeki B, Lee JS, McNally KL, Muchugi A, Ndjiondjop MN, Oyatomi O, Payne TS, Ramachandran S, Rossel G, Roux N, Ruas M, Sansaloni C, Sardos J, Setiyono TD, Tchamba M, van den Houwe I, Velazquez JA, Venuprasad R, Wenzl P, Yazbek M, Zavala C. Ramirez-Villegas J, et al. Among authors: chebotarov d. Nat Plants. 2022 May;8(5):491-499. doi: 10.1038/s41477-022-01144-8. Epub 2022 May 9. Nat Plants. 2022. PMID: 35534721 Free PMC article.
20 results