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Demographic histories of four spruce (Picea) species of the Qinghai-Tibetan Plateau and neighboring areas inferred from multiple nuclear loci.
Li Y, Stocks M, Hemmilä S, Källman T, Zhu H, Zhou Y, Chen J, Liu J, Lascoux M. Li Y, et al. Mol Biol Evol. 2010 May;27(5):1001-14. doi: 10.1093/molbev/msp301. Epub 2009 Dec 22. Mol Biol Evol. 2010. PMID: 20031927
Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies).
Chen J, Källman T, Ma X, Gyllenstrand N, Zaina G, Morgante M, Bousquet J, Eckert A, Wegrzyn J, Neale D, Lagercrantz U, Lascoux M. Chen J, et al. Genetics. 2012 Jul;191(3):865-81. doi: 10.1534/genetics.112.140749. Epub 2012 Apr 27. Genetics. 2012. PMID: 22542968 Free PMC article.
A significant fraction of 21-nucleotide small RNA originates from phased degradation of resistance genes in several perennial species.
Källman T, Chen J, Gyllenstrand N, Lagercrantz U. Källman T, et al. Plant Physiol. 2013 Jun;162(2):741-54. doi: 10.1104/pp.113.214643. Epub 2013 Apr 11. Plant Physiol. 2013. PMID: 23580593 Free PMC article.
Clinal variation at phenology-related genes in spruce: parallel evolution in FTL2 and Gigantea?
Chen J, Tsuda Y, Stocks M, Källman T, Xu N, Kärkkäinen K, Huotari T, Semerikov VL, Vendramin GG, Lascoux M. Chen J, et al. Genetics. 2014 Jul;197(3):1025-38. doi: 10.1534/genetics.114.163063. Epub 2014 May 9. Genetics. 2014. PMID: 24814465 Free PMC article.
A Picea abies linkage map based on SNP markers identifies QTLs for four aspects of resistance to Heterobasidion parviporum infection.
Lind M, Källman T, Chen J, Ma XF, Bousquet J, Morgante M, Zaina G, Karlsson B, Elfstrand M, Lascoux M, Stenlid J. Lind M, et al. PLoS One. 2014 Jul 18;9(7):e101049. doi: 10.1371/journal.pone.0101049. eCollection 2014. PLoS One. 2014. PMID: 25036209 Free PMC article.
Oak genome reveals facets of long lifespan.
Plomion C, Aury JM, Amselem J, Leroy T, Murat F, Duplessis S, Faye S, Francillonne N, Labadie K, Le Provost G, Lesur I, Bartholomé J, Faivre-Rampant P, Kohler A, Leplé JC, Chantret N, Chen J, Diévart A, Alaeitabar T, Barbe V, Belser C, Bergès H, Bodénès C, Bogeat-Triboulot MB, Bouffaud ML, Brachi B, Chancerel E, Cohen D, Couloux A, Da Silva C, Dossat C, Ehrenmann F, Gaspin C, Grima-Pettenati J, Guichoux E, Hecker A, Herrmann S, Hugueney P, Hummel I, Klopp C, Lalanne C, Lascoux M, Lasserre E, Lemainque A, Desprez-Loustau ML, Luyten I, Madoui MA, Mangenot S, Marchal C, Maumus F, Mercier J, Michotey C, Panaud O, Picault N, Rouhier N, Rué O, Rustenholz C, Salin F, Soler M, Tarkka M, Velt A, Zanne AE, Martin F, Wincker P, Quesneville H, Kremer A, Salse J. Plomion C, et al. Nat Plants. 2018 Jul;4(7):440-452. doi: 10.1038/s41477-018-0172-3. Epub 2018 Jun 18. Nat Plants. 2018. PMID: 29915331 Free PMC article.
Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae).
Kryvokhyzha D, Salcedo A, Eriksson MC, Duan T, Tawari N, Chen J, Guerrina M, Kreiner JM, Kent TV, Lagercrantz U, Stinchcombe JR, Glémin S, Wright SI, Lascoux M. Kryvokhyzha D, et al. PLoS Genet. 2019 Feb 15;15(2):e1007949. doi: 10.1371/journal.pgen.1007949. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30768594 Free PMC article.
Genomic insights on the contribution of balancing selection and local adaptation to the long-term survival of a widespread living fossil tree, Cercidiphyllum japonicum.
Zhu S, Chen J, Zhao J, Peter Comes H, Li P, Fu C, Xie X, Lu R, Xu W, Feng Y, Ye W, Sakaguchi S, Isagi Y, Li L, Lascoux M, Qiu Y. Zhu S, et al. New Phytol. 2020 Jul 9. doi: 10.1111/nph.16798. Online ahead of print. New Phytol. 2020. PMID: 32643803
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