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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranović V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M. Burley SK, et al. Among authors: chen l. Nucleic Acids Res. 2021 Jan 8;49(D1):D437-D451. doi: 10.1093/nar/gkaa1038. Nucleic Acids Res. 2021. PMID: 33211854 Free PMC article.
The Protein Data Bank and structural genomics.
Westbrook J, Feng Z, Chen L, Yang H, Berman HM. Westbrook J, et al. Among authors: chen l. Nucleic Acids Res. 2003 Jan 1;31(1):489-91. doi: 10.1093/nar/gkg068. Nucleic Acids Res. 2003. PMID: 12520059 Free PMC article.
The distribution and query systems of the RCSB Protein Data Bank.
Bourne PE, Addess KJ, Bluhm WF, Chen L, Deshpande N, Feng Z, Fleri W, Green R, Merino-Ott JC, Townsend-Merino W, Weissig H, Westbrook J, Berman HM. Bourne PE, et al. Among authors: chen l. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D223-5. doi: 10.1093/nar/gkh096. Nucleic Acids Res. 2004. PMID: 14681399 Free PMC article.
Ligand Depot: a data warehouse for ligands bound to macromolecules.
Feng Z, Chen L, Maddula H, Akcan O, Oughtred R, Berman HM, Westbrook J. Feng Z, et al. Among authors: chen l. Bioinformatics. 2004 Sep 1;20(13):2153-5. doi: 10.1093/bioinformatics/bth214. Epub 2004 Apr 1. Bioinformatics. 2004. PMID: 15059838
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
Deshpande N, Addess KJ, Bluhm WF, Merino-Ott JC, Townsend-Merino W, Zhang Q, Knezevich C, Xie L, Chen L, Feng Z, Green RK, Flippen-Anderson JL, Westbrook J, Berman HM, Bourne PE. Deshpande N, et al. Among authors: chen l. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D233-7. doi: 10.1093/nar/gki057. Nucleic Acids Res. 2005. PMID: 15608185 Free PMC article.
The RCSB PDB information portal for structural genomics.
Kouranov A, Xie L, de la Cruz J, Chen L, Westbrook J, Bourne PE, Berman HM. Kouranov A, et al. Among authors: chen l. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D302-5. doi: 10.1093/nar/gkj120. Nucleic Acids Res. 2006. PMID: 16381872 Free PMC article.
OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK. Young JY, et al. Among authors: chen l, chen m. Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9. Structure. 2017. PMID: 28190782 Free PMC article.
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