Cheng J - Search Results

1

CONFOLD: Residue-residue contact-guided ab initio protein folding.

Adhikari B, Bhattacharya D, Cao R, Cheng J. Adhikari B, et al. Among authors: cheng j. Proteins. 2015 Aug;83(8):1436-49. doi: 10.1002/prot.24829. Epub 2015 Jun 6. Proteins. 2015. PMID: 25974172 Free PMC article.

2

Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.

Cheng J, Baldi P. Cheng J, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i75-84. doi: 10.1093/bioinformatics/bti1004. Bioinformatics. 2005. PMID: 15961501

3

Large-scale prediction of disulphide bridges using kernel methods, two-dimensional recursive neural networks, and weighted graph matching.

Cheng J, Saigo H, Baldi P. Cheng J, et al. Proteins. 2006 Mar 15;62(3):617-29. doi: 10.1002/prot.20787. Proteins. 2006. PMID: 16320312

4

Prediction of protein stability changes for single-site mutations using support vector machines.

Cheng J, Randall A, Baldi P. Cheng J, et al. Proteins. 2006 Mar 1;62(4):1125-32. doi: 10.1002/prot.20810. Proteins. 2006. PMID: 16372356

5

A machine learning information retrieval approach to protein fold recognition.

Cheng J, Baldi P. Cheng J, et al. Bioinformatics. 2006 Jun 15;22(12):1456-63. doi: 10.1093/bioinformatics/btl102. Epub 2006 Mar 17. Bioinformatics. 2006. PMID: 16547073

6

Improved residue contact prediction using support vector machines and a large feature set.

Cheng J, Baldi P. Cheng J, et al. BMC Bioinformatics. 2007 Apr 2;8:113. doi: 10.1186/1471-2105-8-113. BMC Bioinformatics. 2007. PMID: 17407573 Free PMC article.

7

DOMAC: an accurate, hybrid protein domain prediction server.

Cheng J. Cheng J. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. doi: 10.1093/nar/gkm390. Epub 2007 Jun 6. Nucleic Acids Res. 2007. PMID: 17553833 Free PMC article.

8

Assessment of predictions submitted for the CASP7 domain prediction category.

Tress M, Cheng J, Baldi P, Joo K, Lee J, Seo JH, Lee J, Baker D, Chivian D, Kim D, Ezkurdia I. Tress M, et al. Among authors: cheng j. Proteins. 2007;69 Suppl 8:137-51. doi: 10.1002/prot.21675. Proteins. 2007. PMID: 17680686

9

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins.

Randall A, Cheng J, Sweredoski M, Baldi P. Randall A, et al. Among authors: cheng j. Bioinformatics. 2008 Feb 15;24(4):513-20. doi: 10.1093/bioinformatics/btm548. Epub 2007 Nov 15. Bioinformatics. 2008. PMID: 18006547

10

HMMEditor: a visual editing tool for profile hidden Markov model.

Dai J, Cheng J. Dai J, et al. Among authors: cheng j. BMC Genomics. 2008;9 Suppl 1(Suppl 1):S8. doi: 10.1186/1471-2164-9-S1-S8. BMC Genomics. 2008. PMID: 18366621 Free PMC article.

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