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Phospho.ELM: a database of phosphorylation sites--update 2008.
Diella F, Gould CM, Chica C, Via A, Gibson TJ. Diella F, et al. Among authors: chica c. Nucleic Acids Res. 2008 Jan;36(Database issue):D240-4. doi: 10.1093/nar/gkm772. Epub 2007 Oct 25. Nucleic Acids Res. 2008. PMID: 17962309 Free PMC article.
KEPE--a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.
Diella F, Chabanis S, Luck K, Chica C, Ramu C, Nerlov C, Gibson TJ. Diella F, et al. Among authors: chica c. Bioinformatics. 2009 Jan 1;25(1):1-5. doi: 10.1093/bioinformatics/btn594. Epub 2008 Nov 24. Bioinformatics. 2009. PMID: 19033273 Free PMC article.
Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation.
Michael S, Travé G, Ramu C, Chica C, Gibson TJ. Michael S, et al. Among authors: chica c. Bioinformatics. 2008 Feb 15;24(4):453-7. doi: 10.1093/bioinformatics/btm624. Epub 2008 Jan 9. Bioinformatics. 2008. PMID: 18184688
Phospho.ELM: a database of phosphorylation sites--update 2011.
Dinkel H, Chica C, Via A, Gould CM, Jensen LJ, Gibson TJ, Diella F. Dinkel H, et al. Among authors: chica c. Nucleic Acids Res. 2011 Jan;39(Database issue):D261-7. doi: 10.1093/nar/gkq1104. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062810 Free PMC article.
ELM--the database of eukaryotic linear motifs.
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ. Dinkel H, et al. Among authors: chica c. Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110040 Free PMC article.
ELM: the status of the 2010 eukaryotic linear motif resource.
Gould CM, Diella F, Via A, Puntervoll P, Gemünd C, Chabanis-Davidson S, Michael S, Sayadi A, Bryne JC, Chica C, Seiler M, Davey NE, Haslam N, Weatheritt RJ, Budd A, Hughes T, Pas J, Rychlewski L, Travé G, Aasland R, Helmer-Citterich M, Linding R, Gibson TJ. Gould CM, et al. Among authors: chica c. Nucleic Acids Res. 2010 Jan;38(Database issue):D167-80. doi: 10.1093/nar/gkp1016. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920119 Free PMC article.
Evidence for the concerted evolution between short linear protein motifs and their flanking regions.
Chica C, Diella F, Gibson TJ. Chica C, et al. PLoS One. 2009 Jul 8;4(7):e6052. doi: 10.1371/journal.pone.0006052. PLoS One. 2009. PMID: 19584925 Free PMC article.
A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences.
Chica C, Labarga A, Gould CM, López R, Gibson TJ. Chica C, et al. BMC Bioinformatics. 2008 May 6;9:229. doi: 10.1186/1471-2105-9-229. BMC Bioinformatics. 2008. PMID: 18460207 Free PMC article.
A new protein linear motif benchmark for multiple sequence alignment software.
Perrodou E, Chica C, Poch O, Gibson TJ, Thompson JD. Perrodou E, et al. Among authors: chica c. BMC Bioinformatics. 2008 Apr 25;9:213. doi: 10.1186/1471-2105-9-213. BMC Bioinformatics. 2008. PMID: 18439277 Free PMC article.
Understanding eukaryotic linear motifs and their role in cell signaling and regulation.
Diella F, Haslam N, Chica C, Budd A, Michael S, Brown NP, Trave G, Gibson TJ. Diella F, et al. Among authors: chica c. Front Biosci. 2008 May 1;13:6580-603. doi: 10.2741/3175. Front Biosci. 2008. PMID: 18508681 Review.
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