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Sequence assembly using next generation sequencing data--challenges and solutions.
Chin FY, Leung HC, Yiu SM. Chin FY, et al. Sci China Life Sci. 2014 Nov;57(11):1140-8. doi: 10.1007/s11427-014-4752-9. Epub 2014 Oct 17. Sci China Life Sci. 2014. PMID: 25326069 Review.
MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample.
Wang Y, Leung HC, Yiu SM, Chin FY. Wang Y, et al. Bioinformatics. 2012 Sep 15;28(18):i356-i362. doi: 10.1093/bioinformatics/bts397. Bioinformatics. 2012. PMID: 22962452 Free PMC article.
AVAILABILITY: http://i.cs.hku.hk/~alse/MetaCluster/ CONTACT: chin@cs.hku.hk....
AVAILABILITY: http://i.cs.hku.hk/~alse/MetaCluster/ CONTACT: chin@cs.hku.hk....
Meta-IDBA: a de Novo assembler for metagenomic data.
Peng Y, Leung HC, Yiu SM, Chin FY. Peng Y, et al. Bioinformatics. 2011 Jul 1;27(13):i94-101. doi: 10.1093/bioinformatics/btr216. Bioinformatics. 2011. PMID: 21685107 Free PMC article.
CONTACT: chin@cs.hku.hk....
CONTACT: chin@cs.hku.hk....
A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio.
Leung HC, Yiu SM, Yang B, Peng Y, Wang Y, Liu Z, Chen J, Qin J, Li R, Chin FY. Leung HC, et al. Bioinformatics. 2011 Jun 1;27(11):1489-95. doi: 10.1093/bioinformatics/btr186. Epub 2011 Apr 14. Bioinformatics. 2011. PMID: 21493653
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