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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.
Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N. Gostinčar C, et al. Among authors: chiniquy j. BMC Genomics. 2014 Jul 1;15:549. doi: 10.1186/1471-2164-15-549. BMC Genomics. 2014. PMID: 24984952 Free PMC article.
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS. Floudas D, et al. Among authors: chiniquy j. Fungal Genet Biol. 2015 Mar;76:78-92. doi: 10.1016/j.fgb.2015.02.002. Epub 2015 Feb 12. Fungal Genet Biol. 2015. PMID: 25683379 Free PMC article.
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: chiniquy j. Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115. Epub 2018 Jan 9. Proc Natl Acad Sci U S A. 2018. PMID: 29317534 Free PMC article.
A parts list for fungal cellulosomes revealed by comparative genomics.
Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, Hainaut M, Boxma B, van Alen T, Hackstein JHP, Henrissat B, Baker SE, Grigoriev IV, O'Malley MA. Haitjema CH, et al. Among authors: chiniquy j. Nat Microbiol. 2017 May 30;2:17087. doi: 10.1038/nmicrobiol.2017.87. Nat Microbiol. 2017. PMID: 28555641
Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Browne DR, Jenkins J, Schmutz J, Shu S, Barry K, Grimwood J, Chiniquy J, Sharma A, Niehaus TD, Weiss TL, Koppisch AT, Fox DT, Dhungana S, Okada S, Chappell J, Devarenne TP. Browne DR, et al. Among authors: chiniquy j. Genome Announc. 2017 Apr 20;5(16):e00215-17. doi: 10.1128/genomeA.00215-17. Genome Announc. 2017. PMID: 28428306 Free PMC article.
Next generation sequencing data of a defined microbial mock community.
Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T. Singer E, et al. Among authors: chiniquy j. Sci Data. 2016 Sep 27;3:160081. doi: 10.1038/sdata.2016.81. Sci Data. 2016. PMID: 27673566 Free PMC article.
Mevalonate Pathway Promiscuity Enables Noncanonical Terpene Production.
Eiben CB, de Rond T, Bloszies C, Gin J, Chiniquy J, Baidoo EEK, Petzold CJ, Hillson NJ, Fiehn O, Keasling JD. Eiben CB, et al. Among authors: chiniquy j. ACS Synth Biol. 2019 Oct 18;8(10):2238-2247. doi: 10.1021/acssynbio.9b00230. Epub 2019 Oct 2. ACS Synth Biol. 2019. PMID: 31576747