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2014 1
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Page 1
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: chitre as. Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. Epub 2024 Mar 26. Cell Genom. 2024. PMID: 38537634 Free PMC article.
Single-nucleus genomics in outbred rats with divergent cocaine addiction-like behaviors reveals changes in amygdala GABAergic inhibition.
Zhou JL, de Guglielmo G, Ho AJ, Kallupi M, Pokhrel N, Li HR, Chitre AS, Munro D, Mohammadi P, Carrette LLG, George O, Palmer AA, McVicker G, Telese F. Zhou JL, et al. Among authors: chitre as. Nat Neurosci. 2023 Nov;26(11):1868-1879. doi: 10.1038/s41593-023-01452-y. Epub 2023 Oct 5. Nat Neurosci. 2023. PMID: 37798411 Free PMC article.
Automated quantitative trait locus analysis (AutoQTL).
Freda PJ, Ghosh A, Zhang E, Luo T, Chitre AS, Polesskaya O, St Pierre CL, Gao J, Martin CD, Chen H, Garcia-Martinez AG, Wang T, Han W, Ishiwari K, Meyer P, Lamparelli A, King CP, Palmer AA, Li R, Moore JH. Freda PJ, et al. Among authors: chitre as. BioData Min. 2023 Apr 10;16(1):14. doi: 10.1186/s13040-023-00331-3. BioData Min. 2023. PMID: 37038201 Free PMC article.
Automated quantitative trait locus analysis (AutoQTL).
Freda PJ, Ghosh A, Zhang E, Luo T, Chitre A, Polesskaya O, St Pierre CL, Gao J, Martin CD, Chen H, Garcia-Martinez AG, Wang T, Han W, Ishiwari K, Meyer P, Lamparelli A, King CP, Palmer AA, Li R, Moore JH. Freda PJ, et al. Among authors: chitre a. bioRxiv [Preprint]. 2023 Jan 13:2023.01.12.523835. doi: 10.1101/2023.01.12.523835. bioRxiv. 2023. Update in: BioData Min. 2023 Apr 10;16(1):14. doi: 10.1186/s13040-023-00331-3. PMID: 36711526 Free PMC article. Updated. Preprint.
Integration of evidence across human and model organism studies: A meeting report.
Palmer RHC, Johnson EC, Won H, Polimanti R, Kapoor M, Chitre A, Bogue MA, Benca-Bachman CE, Parker CC, Verma A, Reynolds T, Ernst J, Bray M, Kwon SB, Lai D, Quach BC, Gaddis NC, Saba L, Chen H, Hawrylycz M, Zhang S, Zhou Y, Mahaffey S, Fischer C, Sanchez-Roige S, Bandrowski A, Lu Q, Shen L, Philip V, Gelernter J, Bierut LJ, Hancock DB, Edenberg HJ, Johnson EO, Nestler EJ, Barr PB, Prins P, Smith DJ, Akbarian S, Thorgeirsson T, Walton D, Baker E, Jacobson D, Palmer AA, Miles M, Chesler EJ, Emerson J, Agrawal A, Martone M, Williams RW. Palmer RHC, et al. Among authors: chitre a. Genes Brain Behav. 2021 Apr 23;20(6):e12738. doi: 10.1111/gbb.12738. Online ahead of print. Genes Brain Behav. 2021. PMID: 33893716 Free PMC article. Review.
Genome-wide association study reveals multiple loci for nociception and opioid consumption behaviors associated with heroin vulnerability in outbred rats.
Kuhn BN, Cannella NN, Chitre A, Nguyen KH, Cohen K, Chen D, Peng B, Ziegler KS, Lin B, Johnson B, Missfeldt Sanchez T, Crow AD, Lunerti V, Gupta A, Dereschewitz E, Soverchia L, Hopkins JL, Roberts AT, Ubaldi M, Abdulmalek S, Kinen A, Hardiman G, Chung D, Polesskaya O, Solberg-Woods L, Ciccocioppo R, Kalivas P, Palmer AA. Kuhn BN, et al. Among authors: chitre a. bioRxiv [Preprint]. 2024 Nov 11:2024.02.27.582340. doi: 10.1101/2024.02.27.582340. bioRxiv. 2024. Update in: Mol Psychiatry. 2025 Feb 25. doi: 10.1038/s41380-025-02922-4. PMID: 38712202 Free PMC article. Updated. Preprint.
Large-scale characterization of cocaine addiction-like behaviors reveals that escalation of intake, aversion-resistant responding, and breaking-points are highly correlated measures of the same construct.
de Guglielmo G, Carrette L, Kallupi M, Brennan M, Boomhower B, Maturin L, Conlisk D, Sedighim S, Tieu L, Fannon MJ, Martinez AR, Velarde N, Othman D, Sichel B, Ramborger J, Lau J, Kononoff J, Kimbrough A, Simpson S, Smith LC, Shankar K, Bonnet-Zahedi S, Sneddon EA, Avelar A, Plasil SL, Mosquera J, Crook C, Chun L, Vang A, Milan KK, Schweitzer P, Lin B, Peng B, Chitre AS, Polesskaya O, Solberg Woods LC, Palmer AA, George O. de Guglielmo G, et al. Among authors: chitre as. Elife. 2024 Nov 1;12:RP90422. doi: 10.7554/eLife.90422. Elife. 2024. PMID: 39484794 Free PMC article.
An exponential increase in QTL detection with an increased sample size.
Chitre AS, Polesskaya O, Munro D, Cheng R, Mohammadi P, Holl K, Gao J, Bimschleger H, Martinez AG, George AM, Gileta AF, Han W, Horvath A, Hughson A, Ishiwari K, King CP, Lamparelli A, Versaggi CL, Martin CD, St Pierre CL, Tripi JA, Richards JB, Wang T, Chen H, Flagel SB, Meyer P, Robinson TE, Solberg Woods LC, Palmer AA. Chitre AS, et al. Genetics. 2023 May 26;224(2):iyad054. doi: 10.1093/genetics/iyad054. Genetics. 2023. PMID: 36974931 Free PMC article.
The Cocaine and Oxycodone Biobanks, Two Repositories from Genetically Diverse and Behaviorally Characterized Rats for the Study of Addiction.
Carrette LLG, de Guglielmo G, Kallupi M, Maturin L, Brennan M, Boomhower B, Conlisk D, Sedighim S, Tieu L, Fannon MJ, Velarde N, Martinez AR, Kononoff J, Kimbrough A, Simpson S, Smith LC, Shankar K, Ramirez FJ, Chitre AS, Lin B, Polesskaya O, Solberg Woods LC, Palmer AA, George O. Carrette LLG, et al. Among authors: chitre as. eNeuro. 2021 Jun 17;8(3):ENEURO.0033-21.2021. doi: 10.1523/ENEURO.0033-21.2021. Print 2021 May-Jun. eNeuro. 2021. PMID: 33875455 Free PMC article. Review.
Genome-wide association study of delay discounting in Heterogenous Stock rats.
Lara MK, Chitre AS, Chen D, Johnson BB, Nguyen KM, Cohen KA, Muckadam SA, Lin B, Ziegler S, Beeson A, Sanches T, Solberg Woods LC, Polesskaya O, Palmer AA, Mitchell SH. Lara MK, et al. Among authors: chitre as. bioRxiv [Preprint]. 2023 Dec 13:2023.12.12.570851. doi: 10.1101/2023.12.12.570851. bioRxiv. 2023. Update in: Genes Brain Behav. 2024 Aug;23(4):e12909. doi: 10.1111/gbb.12909. PMID: 38168347 Free PMC article. Updated. Preprint.
41 results