Choi K - Search Results

1

Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics.

Choi K, Chen Y, Skelly DA, Churchill GA. Choi K, et al. Genome Biol. 2020 Jul 27;21(1):183. doi: 10.1186/s13059-020-02103-2. Genome Biol. 2020. PMID: 32718323 Free PMC article.

2

RNA-Seq alignment to individualized genomes improves transcript abundance estimates in multiparent populations.

Munger SC, Raghupathy N, Choi K, Simons AK, Gatti DM, Hinerfeld DA, Svenson KL, Keller MP, Attie AD, Hibbs MA, Graber JH, Chesler EJ, Churchill GA. Munger SC, et al. Among authors: choi k. Genetics. 2014 Sep;198(1):59-73. doi: 10.1534/genetics.114.165886. Genetics. 2014. PMID: 25236449 Free PMC article.

3

Defining the consequences of genetic variation on a proteome-wide scale.

Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP. Chick JM, et al. Among authors: choi k. Nature. 2016 Jun 23;534(7608):500-5. doi: 10.1038/nature18270. Epub 2016 Jun 15. Nature. 2016. PMID: 27309819 Free PMC article.

4

Hierarchical analysis of RNA-seq reads improves the accuracy of allele-specific expression.

Raghupathy N, Choi K, Vincent MJ, Beane GL, Sheppard KS, Munger SC, Korstanje R, Pardo-Manual de Villena F, Churchill GA. Raghupathy N, et al. Among authors: choi k. Bioinformatics. 2018 Jul 1;34(13):2177-2184. doi: 10.1093/bioinformatics/bty078. Bioinformatics. 2018. PMID: 29444201 Free PMC article.

5

A Bayesian mixture model for the analysis of allelic expression in single cells.

Choi K, Raghupathy N, Churchill GA. Choi K, et al. Nat Commun. 2019 Nov 15;10(1):5188. doi: 10.1038/s41467-019-13099-0. Nat Commun. 2019. PMID: 31729374 Free PMC article.

6

Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency.

Skelly DA, Czechanski A, Byers C, Aydin S, Spruce C, Olivier C, Choi K, Gatti DM, Raghupathy N, Keele GR, Stanton A, Vincent M, Dion S, Greenstein I, Pankratz M, Porter DK, Martin W, O'Connor C, Qin W, Harrill AH, Choi T, Churchill GA, Munger SC, Baker CL, Reinholdt LG. Skelly DA, et al. Among authors: choi k, choi t. Cell Stem Cell. 2020 Sep 3;27(3):459-469.e8. doi: 10.1016/j.stem.2020.07.005. Epub 2020 Aug 13. Cell Stem Cell. 2020. PMID: 32795400 Free PMC article.

7

Publisher Correction: Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics.

Choi K, Chen Y, Skelly DA, Churchill GA. Choi K, et al. Genome Biol. 2020 Nov 3;21(1):270. doi: 10.1186/s13059-020-02182-1. Genome Biol. 2020. PMID: 33143736 Free PMC article.

8

Natural genetic variation determines microglia heterogeneity in wild-derived mouse models of Alzheimer's disease.

Yang HS, Onos KD, Choi K, Keezer KJ, Skelly DA, Carter GW, Howell GR. Yang HS, et al. Among authors: choi k. Cell Rep. 2021 Feb 9;34(6):108739. doi: 10.1016/j.celrep.2021.108739. Cell Rep. 2021. PMID: 33567283 Free PMC article.

9

Author Correction: Defining the consequences of genetic variation on a proteome-wide scale.

Chick JM, Munger SC, Simecek P, Huttlin EL, Choi K, Gatti DM, Raghupathy N, Svenson KL, Churchill GA, Gygi SP. Chick JM, et al. Among authors: choi k. Nature. 2022 Jun;606(7915):E16. doi: 10.1038/s41586-022-04920-w. Nature. 2022. PMID: 35672473 No abstract available.

10

SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty.

Wu EY, Singh NP, Choi K, Zakeri M, Vincent M, Churchill GA, Ackert-Bicknell CL, Patro R, Love MI. Wu EY, et al. Among authors: choi k. Genome Biol. 2023 Jul 12;24(1):165. doi: 10.1186/s13059-023-03003-x. Genome Biol. 2023. PMID: 37438847 Free PMC article.

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