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A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays.
Ning K, Choi KP, Leong HW, Zhang L. Ning K, et al. Among authors: choi kp. Nucleic Acids Res. 2005 Sep 28;33(17):e144. doi: 10.1093/nar/gni147. Nucleic Acids Res. 2005. PMID: 16192568 Free PMC article.
Promoter profiling and coexpression data analysis identifies 24 novel genes that are coregulated with AMPA receptor genes, GRIAs.
Chong A, Zhang Z, Choi KP, Choudhary V, Djamgoz MB, Zhang G, Bajic VB. Chong A, et al. Among authors: choi kp. Genomics. 2007 Mar;89(3):378-84. doi: 10.1016/j.ygeno.2006.11.009. Epub 2007 Jan 5. Genomics. 2007. PMID: 17208408
A quantum leap in the reproducibility, precision, and sensitivity of gene expression profile analysis even when sample size is extremely small.
Lim K, Li Z, Choi KP, Wong L. Lim K, et al. Among authors: choi kp. J Bioinform Comput Biol. 2015 Aug;13(4):1550018. doi: 10.1142/S0219720015500183. Epub 2015 May 26. J Bioinform Comput Biol. 2015. PMID: 26166210
Scoring schemes of palindrome clusters for more sensitive prediction of replication origins in herpesviruses.
Chew DS, Choi KP, Leung MY. Chew DS, et al. Among authors: choi kp. Nucleic Acids Res. 2005 Sep 1;33(15):e134. doi: 10.1093/nar/gni135. Nucleic Acids Res. 2005. PMID: 16141192 Free PMC article.
Profiling the transcription factor regulatory networks of human cell types.
Zhang S, Tian D, Tran NH, Choi KP, Zhang L. Zhang S, et al. Among authors: choi kp. Nucleic Acids Res. 2014 Nov 10;42(20):12380-7. doi: 10.1093/nar/gku923. Epub 2014 Oct 9. Nucleic Acids Res. 2014. PMID: 25300490 Free PMC article.
ConReg-R: Extrapolative recalibration of the empirical distribution of p-values to improve false discovery rate estimates.
Li J, Paramita P, Choi KP, Karuturi RK. Li J, et al. Among authors: choi kp. Biol Direct. 2011 May 20;6:27. doi: 10.1186/1745-6150-6-27. Biol Direct. 2011. PMID: 21595983 Free PMC article.
Good spaced seeds for homology search.
Choi KP, Zeng F, Zhang L. Choi KP, et al. Bioinformatics. 2004 May 1;20(7):1053-9. doi: 10.1093/bioinformatics/bth037. Epub 2004 Feb 5. Bioinformatics. 2004. PMID: 14764573
AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions.
Chew DS, Leung MY, Choi KP. Chew DS, et al. Among authors: choi kp. BMC Bioinformatics. 2007 May 21;8:163. doi: 10.1186/1471-2105-8-163. BMC Bioinformatics. 2007. PMID: 17517140 Free PMC article.
Stage-specific protein-domain mutational profile of invasive ductal breast cancer.
Yu T, Choi KP, Chen ES, Zhang L. Yu T, et al. Among authors: choi kp. BMC Med Genomics. 2020 Oct 22;13(Suppl 10):150. doi: 10.1186/s12920-020-00777-y. BMC Med Genomics. 2020. PMID: 33087126 Free PMC article.
On cherry and pitchfork distributions of random rooted and unrooted phylogenetic trees.
Choi KP, Thompson A, Wu T. Choi KP, et al. Theor Popul Biol. 2020 Apr;132:92-104. doi: 10.1016/j.tpb.2020.02.001. Epub 2020 Mar 3. Theor Popul Biol. 2020. PMID: 32135170
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