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Year Number of Results
2015 1
2016 3
2017 1
2018 1
2019 1
2020 2
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8 results
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Page 1
An atlas of human metabolism.
Robinson JL, Kocabaş P, Wang H, Cholley PE, Cook D, Nilsson A, Anton M, Ferreira R, Domenzain I, Billa V, Limeta A, Hedin A, Gustafsson J, Kerkhoven EJ, Svensson LT, Palsson BO, Mardinoglu A, Hansson L, Uhlén M, Nielsen J. Robinson JL, et al. Among authors: cholley pe. Sci Signal. 2020 Mar 24;13(624):eaaz1482. doi: 10.1126/scisignal.aaz1482. Sci Signal. 2020. PMID: 32209698 Free PMC article.
Modeling gene-regulatory networks to describe cell fate transitions and predict master regulators.
Cholley PE, Moehlin J, Rohmer A, Zilliox V, Nicaise S, Gronemeyer H, Mendoza-Parra MA. Cholley PE, et al. NPJ Syst Biol Appl. 2018 Aug 2;4:29. doi: 10.1038/s41540-018-0066-z. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 30083390 Free PMC article.
A comprehensive resource for retrieving, visualizing, and integrating functional genomics data.
Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H, Mendoza-Parra MA. Blum M, et al. Among authors: cholley pe. Life Sci Alliance. 2019 Dec 9;3(1):e201900546. doi: 10.26508/lsa.201900546. Print 2020 Jan. Life Sci Alliance. 2019. PMID: 31818883 Free PMC article.
Epimetheus - a multi-profile normalizer for epigenomic sequencing data.
Saleem MM, Mendoza-Parra MA, Cholley PE, Blum M, Gronemeyer H. Saleem MM, et al. Among authors: cholley pe. BMC Bioinformatics. 2017 May 12;18(1):259. doi: 10.1186/s12859-017-1655-3. BMC Bioinformatics. 2017. PMID: 28499349 Free PMC article.
NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.
Mendoza-Parra MA, Saleem MA, Blum M, Cholley PE, Gronemeyer H. Mendoza-Parra MA, et al. Among authors: cholley pe. Methods Mol Biol. 2016;1418:243-65. doi: 10.1007/978-1-4939-3578-9_13. Methods Mol Biol. 2016. PMID: 27008019
LOGIQA: a database dedicated to long-range genome interactions quality assessment.
Mendoza-Parra MA, Blum M, Malysheva V, Cholley PE, Gronemeyer H. Mendoza-Parra MA, et al. Among authors: cholley pe. BMC Genomics. 2016 May 16;17:355. doi: 10.1186/s12864-016-2642-1. BMC Genomics. 2016. PMID: 27185059 Free PMC article.
Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification.
Mendoza-Parra MA, Saravaki V, Cholley PE, Blum M, Billoré B, Gronemeyer H. Mendoza-Parra MA, et al. Among authors: cholley pe. F1000Res. 2016 Jan 12;5:54. doi: 10.12688/f1000research.7637.2. eCollection 2016. F1000Res. 2016. PMID: 27335635 Free PMC article.
Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.
Freel KC, Krueger MC, Farasin J, Brochier-Armanet C, Barbe V, Andrès J, Cholley PE, Dillies MA, Jagla B, Koechler S, Leva Y, Magdelenat G, Plewniak F, Proux C, Coppée JY, Bertin PN, Heipieper HJ, Arsène-Ploetze F. Freel KC, et al. Among authors: cholley pe. PLoS One. 2015 Sep 30;10(9):e0139011. doi: 10.1371/journal.pone.0139011. eCollection 2015. PLoS One. 2015. PMID: 26422469 Free PMC article.