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Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome.
Keeble-Gagnère G, Rigault P, Tibbits J, Pasam R, Hayden M, Forrest K, Frenkel Z, Korol A, Huang BE, Cavanagh C, Taylor J, Abrouk M, Sharpe A, Konkin D, Sourdille P, Darrier B, Choulet F, Bernard A, Rochfort S, Dimech A, Watson-Haigh N, Baumann U, Eckermann P, Fleury D, Juhasz A, Boisvert S, Nolin MA, Doležel J, Šimková H, Toegelová H, Šafář J, Luo MC, Câmara F, Pfeifer M, Isdale D, Nyström-Persson J, Iwgsc, Koo DH, Tinning M, Cui D, Ru Z, Appels R. Keeble-Gagnère G, et al. Among authors: choulet f. Genome Biol. 2018 Aug 17;19(1):112. doi: 10.1186/s13059-018-1475-4. Genome Biol. 2018. PMID: 30115128 Free PMC article.
A physical map of the 1-gigabase bread wheat chromosome 3B.
Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudah E, Somers D, Kilian A, Alaux M, Vautrin S, Bergès H, Eversole K, Appels R, Safar J, Simkova H, Dolezel J, Bernard M, Feuillet C. Paux E, et al. Among authors: choulet f. Science. 2008 Oct 3;322(5898):101-4. doi: 10.1126/science.1161847. Science. 2008. PMID: 18832645
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.
Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P, Schlub S, Le Paslier MC, Magdelenat G, Gonthier C, Couloux A, Budak H, Breen J, Pumphrey M, Liu S, Kong X, Jia J, Gut M, Brunel D, Anderson JA, Gill BS, Appels R, Keller B, Feuillet C. Choulet F, et al. Plant Cell. 2010 Jun;22(6):1686-701. doi: 10.1105/tpc.110.074187. Epub 2010 Jun 25. Plant Cell. 2010. PMID: 20581307 Free PMC article.
Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.
Wicker T, Mayer KF, Gundlach H, Martis M, Steuernagel B, Scholz U, Simková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Dolezel J, Keller B, Stein N. Wicker T, et al. Among authors: choulet f. Plant Cell. 2011 May;23(5):1706-18. doi: 10.1105/tpc.111.086629. Epub 2011 May 27. Plant Cell. 2011. PMID: 21622801 Free PMC article.
A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.
Rustenholz C, Choulet F, Laugier C, Safár J, Simková H, Dolezel J, Magni F, Scalabrin S, Cattonaro F, Vautrin S, Bellec A, Bergès H, Feuillet C, Paux E. Rustenholz C, et al. Among authors: choulet f. Plant Physiol. 2011 Dec;157(4):1596-608. doi: 10.1104/pp.111.183921. Epub 2011 Oct 27. Plant Physiol. 2011. PMID: 22034626 Free PMC article.
Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.
Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C. Philippe R, et al. Among authors: choulet f. BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47. BMC Genomics. 2012. PMID: 22289472 Free PMC article.
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.
Philippe R, Paux E, Bertin I, Sourdille P, Choulet F, Laugier C, Simková H, Safář J, Bellec A, Vautrin S, Frenkel Z, Cattonaro F, Magni F, Scalabrin S, Martis MM, Mayer KF, Korol A, Bergès H, Doležel J, Feuillet C. Philippe R, et al. Among authors: choulet f. Genome Biol. 2013 Jun 25;14(6):R64. doi: 10.1186/gb-2013-14-6-r64. Genome Biol. 2013. PMID: 23800011 Free PMC article.
55 results