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A single missense mutation in a coiled-coil domain of Escherichia coli ribosomal protein S2 confers a thermosensitive phenotype that can be suppressed by ribosomal protein S1.
Aseev LV, Chugunov AO, Efremov RG, Boni IV. Aseev LV, et al. J Bacteriol. 2013 Jan;195(1):95-104. doi: 10.1128/JB.01305-12. Epub 2012 Oct 26. J Bacteriol. 2013. PMID: 23104805 Free PMC article.
Differences in binding sites of two melatonin receptors help to explain their selectivity to some melatonin analogs: a molecular modeling study.
Chugunov AO, Farce A, Chavatte P, Efremov RG. Chugunov AO, et al. J Biomol Struct Dyn. 2006 Oct;24(2):91-107. doi: 10.1080/07391102.2006.10507103. J Biomol Struct Dyn. 2006. PMID: 16928133
Molecular lipophilicity in protein modeling and drug design.
Efremov RG, Chugunov AO, Pyrkov TV, Priestle JP, Arseniev AS, Jacoby E. Efremov RG, et al. Curr Med Chem. 2007;14(4):393-415. doi: 10.2174/092986707779941050. Curr Med Chem. 2007. PMID: 17305542 Review.
Method to assess packing quality of transmembrane alpha-helices in proteins. 1. Parametrization using structural data.
Chugunov AO, Novoseletsky VN, Nolde DE, Arseniev AS, Efremov RG. Chugunov AO, et al. J Chem Inf Model. 2007 May-Jun;47(3):1150-62. doi: 10.1021/ci600516x. Epub 2007 Mar 20. J Chem Inf Model. 2007. PMID: 17371005
Insulin receptor-related receptor as an extracellular alkali sensor.
Deyev IE, Sohet F, Vassilenko KP, Serova OV, Popova NV, Zozulya SA, Burova EB, Houillier P, Rzhevsky DI, Berchatova AA, Murashev AN, Chugunov AO, Efremov RG, Nikol'sky NN, Bertelli E, Eladari D, Petrenko AG. Deyev IE, et al. Cell Metab. 2011 Jun 8;13(6):679-89. doi: 10.1016/j.cmet.2011.03.022. Cell Metab. 2011. PMID: 21641549 Free PMC article.
Recent advances in computational modeling of α-helical membrane-active peptides.
Polyansky AA, Chugunov AO, Vassilevski AA, Grishin EV, Efremov RG. Polyansky AA, et al. Curr Protein Pept Sci. 2012 Nov;13(7):644-57. doi: 10.2174/138920312804142147. Curr Protein Pept Sci. 2012. PMID: 23363529 Review.
Modular organization of α-toxins from scorpion venom mirrors domain structure of their targets, sodium channels.
Chugunov AO, Koromyslova AD, Berkut AA, Peigneur S, Tytgat J, Polyansky AA, Pentkovsky VM, Vassilevski AA, Grishin EV, Efremov RG. Chugunov AO, et al. J Biol Chem. 2013 Jun 28;288(26):19014-27. doi: 10.1074/jbc.M112.431650. Epub 2013 May 1. J Biol Chem. 2013. PMID: 23637230 Free PMC article.
PREDDIMER: a web server for prediction of transmembrane helical dimers.
Polyansky AA, Chugunov AO, Volynsky PE, Krylov NA, Nolde DE, Efremov RG. Polyansky AA, et al. Bioinformatics. 2014 Mar 15;30(6):889-90. doi: 10.1093/bioinformatics/btt645. Epub 2013 Nov 7. Bioinformatics. 2014. PMID: 24202542
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