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Genome maps across 26 human populations reveal population-specific patterns of structural variation.
Levy-Sakin M, Pastor S, Mostovoy Y, Li L, Leung AKY, McCaffrey J, Young E, Lam ET, Hastie AR, Wong KHY, Chung CYL, Ma W, Sibert J, Rajagopalan R, Jin N, Chow EYC, Chu C, Poon A, Lin C, Naguib A, Wang WP, Cao H, Chan TF, Yip KY, Xiao M, Kwok PY. Levy-Sakin M, et al. Among authors: chung cyl. Nat Commun. 2019 Mar 4;10(1):1025. doi: 10.1038/s41467-019-08992-7. Nat Commun. 2019. PMID: 30833565 Free PMC article.
Construction and comparison of three reference-quality genome assemblies for soybean.
Valliyodan B, Cannon SB, Bayer PE, Shu S, Brown AV, Ren L, Jenkins J, Chung CY, Chan TF, Daum CG, Plott C, Hastie A, Baruch K, Barry KW, Huang W, Patil G, Varshney RK, Hu H, Batley J, Yuan Y, Song Q, Stupar RM, Goodstein DM, Stacey G, Lam HM, Jackson SA, Schmutz J, Grimwood J, Edwards D, Nguyen HT. Valliyodan B, et al. Plant J. 2019 Dec;100(5):1066-1082. doi: 10.1111/tpj.14500. Epub 2019 Oct 28. Plant J. 2019. PMID: 31433882 Free article.
The fidelity of transcription in human cells.
Chung C, Verheijen BM, Zhang X, Huang B, Coakley A, McGann E, Wade E, Dinep-Schneider O, LaGosh J, Anagnostou ME, Simpson S, Thomas K, Ernst M, Rattray A, Lynch M, Kashlev M, Benayoun BA, Li Z, Strathern J, Gout JF, Vermulst M. Chung C, et al. Proc Natl Acad Sci U S A. 2023 Jan 31;120(5):e2210038120. doi: 10.1073/pnas.2210038120. Epub 2023 Jan 25. Proc Natl Acad Sci U S A. 2023. PMID: 36696440 Free PMC article.
Accurate identification of structural variations from cancer samples.
Li L, Hong C, Xu J, Chung CY, Leung AK, Boncan DAT, Cheng L, Lo KW, Lai PBS, Wong J, Zhou J, Cheng AS, Chan TF, Yue F, Yip KY. Li L, et al. Brief Bioinform. 2023 Nov 22;25(1):bbad520. doi: 10.1093/bib/bbad520. Brief Bioinform. 2023. PMID: 38233091 Free PMC article.
Advances in optical mapping for genomic research.
Yuan Y, Chung CY, Chan TF. Yuan Y, et al. Comput Struct Biotechnol J. 2020 Aug 1;18:2051-2062. doi: 10.1016/j.csbj.2020.07.018. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32802277 Free PMC article. Review.
A reference-grade wild soybean genome.
Xie M, Chung CY, Li MW, Wong FL, Wang X, Liu A, Wang Z, Leung AK, Wong TH, Tong SW, Xiao Z, Fan K, Ng MS, Qi X, Yang L, Deng T, He L, Chen L, Fu A, Ding Q, He J, Chung G, Isobe S, Tanabata T, Valliyodan B, Nguyen HT, Cannon SB, Foyer CH, Chan TF, Lam HM. Xie M, et al. Nat Commun. 2019 Mar 14;10(1):1216. doi: 10.1038/s41467-019-09142-9. Nat Commun. 2019. PMID: 30872580 Free PMC article.
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