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Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.
Tolonen AC, Chilaka AC, Church GM. Tolonen AC, et al. Among authors: church gm. Mol Microbiol. 2009 Dec;74(6):1300-13. doi: 10.1111/j.1365-2958.2009.06890.x. Epub 2009 Sep 22. Mol Microbiol. 2009. PMID: 19775243 Free PMC article.
Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Link AJ, Robison K, Church GM. Link AJ, et al. Among authors: church gm. Electrophoresis. 1997 Aug;18(8):1259-313. doi: 10.1002/elps.1150180807. Electrophoresis. 1997. PMID: 9298646 Review.
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization.
Link AJ, Phillips D, Church GM. Link AJ, et al. Among authors: church gm. J Bacteriol. 1997 Oct;179(20):6228-37. doi: 10.1128/jb.179.20.6228-6237.1997. J Bacteriol. 1997. PMID: 9335267 Free PMC article.
Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli.
Tavazoie S, Church GM. Tavazoie S, et al. Among authors: church gm. Nat Biotechnol. 1998 Jun;16(6):566-71. doi: 10.1038/nbt0698-566. Nat Biotechnol. 1998. PMID: 9624689
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome.
Robison K, McGuire AM, Church GM. Robison K, et al. Among authors: church gm. J Mol Biol. 1998 Nov 27;284(2):241-54. doi: 10.1006/jmbi.1998.2160. J Mol Biol. 1998. PMID: 9813115
Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps.
Johnson JM, Church GM. Johnson JM, et al. Among authors: church gm. J Mol Biol. 1999 Apr 2;287(3):695-715. doi: 10.1006/jmbi.1999.2630. J Mol Biol. 1999. PMID: 10092468
A weight matrix for binding recognition by the redox-response regulator ArcA-P of Escherichia coli.
McGuire AM, De Wulf P, Church GM, Lin EC. McGuire AM, et al. Among authors: church gm. Mol Microbiol. 1999 Apr;32(1):219-21. doi: 10.1046/j.1365-2958.1999.01347.x. Mol Microbiol. 1999. PMID: 10216875 No abstract available.
Modeling gene expression with differential equations.
Chen T, He HL, Church GM. Chen T, et al. Among authors: church gm. Pac Symp Biocomput. 1999:29-40. Pac Symp Biocomput. 1999. PMID: 10380183
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
Hughes JD, Estep PW, Tavazoie S, Church GM. Hughes JD, et al. Among authors: church gm. J Mol Biol. 2000 Mar 10;296(5):1205-14. doi: 10.1006/jmbi.2000.3519. J Mol Biol. 2000. PMID: 10698627
RNA expression analysis using a 30 base pair resolution Escherichia coli genome array.
Selinger DW, Cheung KJ, Mei R, Johansson EM, Richmond CS, Blattner FR, Lockhart DJ, Church GM. Selinger DW, et al. Among authors: church gm. Nat Biotechnol. 2000 Dec;18(12):1262-8. doi: 10.1038/82367. Nat Biotechnol. 2000. PMID: 11101804
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