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A Hidden Markov Model approach to variation among sites in rate of evolution.
Felsenstein J, Churchill GA. Felsenstein J, et al. Mol Biol Evol. 1996 Jan;13(1):93-104. doi: 10.1093/oxfordjournals.molbev.a025575. Mol Biol Evol. 1996. PMID: 8583911
Sample size for a phylogenetic inference.
Churchill GA, von Haeseler A, Navidi WC. Churchill GA, et al. Mol Biol Evol. 1992 Jul;9(4):753-69. doi: 10.1093/oxfordjournals.molbev.a040757. Mol Biol Evol. 1992. PMID: 1630311
The information content of a character under a Markov model of evolution.
Shpak M, Churchill GA. Shpak M, et al. Mol Phylogenet Evol. 2000 Nov;17(2):231-43. doi: 10.1006/mpev.2000.0846. Mol Phylogenet Evol. 2000. PMID: 11083937
Network models for sequence evolution.
von Haeseler A, Churchill GA. von Haeseler A, et al. J Mol Evol. 1993 Jul;37(1):77-85. doi: 10.1007/BF00170465. J Mol Evol. 1993. PMID: 8395605
Stable maintenance of a 35-base-pair yeast mitochondrial genome.
Fangman WL, Henly JW, Churchill G, Brewer BJ. Fangman WL, et al. Mol Cell Biol. 1989 May;9(5):1917-21. doi: 10.1128/mcb.9.5.1917. Mol Cell Biol. 1989. PMID: 2664462 Free PMC article.
A Bayesian framework for inference of the genotype-phenotype map for segregating populations.
Hageman RS, Leduc MS, Korstanje R, Paigen B, Churchill GA. Hageman RS, et al. Genetics. 2011 Apr;187(4):1163-70. doi: 10.1534/genetics.110.123273. Epub 2011 Jan 17. Genetics. 2011. PMID: 21242536 Free PMC article.
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