Cisneros GA - Search Results

1

Molecular basis for the initiation of DNA primer synthesis.

Li AWH, Zabrady K, Bainbridge LJ, Zabrady M, Naseem-Khan S, Berger MB, Kolesar P, Cisneros GA, Doherty AJ. Li AWH, et al. Among authors: cisneros ga. Nature. 2022 May;605(7911):767-773. doi: 10.1038/s41586-022-04695-0. Epub 2022 May 4. Nature. 2022. PMID: 35508653 Free PMC article.

2

Comparison of DNA and RNA substrate effects on TET2 structure.

Leddin EM, Cisneros GA. Leddin EM, et al. Among authors: cisneros ga. Adv Protein Chem Struct Biol. 2019;117:91-112. doi: 10.1016/bs.apcsb.2019.05.002. Epub 2019 Jun 11. Adv Protein Chem Struct Biol. 2019. PMID: 31564308 Free PMC article.

3

Development and application of quantum mechanics/molecular mechanics methods with advanced polarizable potentials.

Nochebuena J, Naseem-Khan S, Cisneros GA. Nochebuena J, et al. Among authors: cisneros ga. Wiley Interdiscip Rev Comput Mol Sci. 2021 Jul-Aug;11(4):e1515. doi: 10.1002/wcms.1515. Epub 2021 Jan 12. Wiley Interdiscip Rev Comput Mol Sci. 2021. PMID: 34367343 Free PMC article.

4

Computational investigations of selected enzymes from two iron and α-ketoglutarate-dependent families.

Berger MB, Walker AR, Vázquez-Montelongo EA, Cisneros GA. Berger MB, et al. Among authors: cisneros ga. Phys Chem Chem Phys. 2021 Oct 13;23(39):22227-22240. doi: 10.1039/d1cp03800a. Phys Chem Chem Phys. 2021. PMID: 34586107 Free PMC article. Review.

5

Improvement of the Gaussian Electrostatic Model by separate fitting of Coulomb and exchange-repulsion densities and implementation of a new dispersion term.

Naseem-Khan S, Piquemal JP, Cisneros GA. Naseem-Khan S, et al. Among authors: cisneros ga. J Chem Phys. 2021 Nov 21;155(19):194103. doi: 10.1063/5.0072380. J Chem Phys. 2021. PMID: 34800949 Free PMC article.

6

Impact of Remdesivir Incorporation along the Primer Strand on SARS-CoV-2 RNA-Dependent RNA Polymerase.

Naseem-Khan S, Berger MB, Leddin EM, Maghsoud Y, Cisneros GA. Naseem-Khan S, et al. Among authors: cisneros ga. J Chem Inf Model. 2022 May 23;62(10):2456-2465. doi: 10.1021/acs.jcim.2c00201. Epub 2022 Apr 18. J Chem Inf Model. 2022. PMID: 35435671 Free PMC article.

7

Development of the Quantum-Inspired SIBFA Many-Body Polarizable Force Field: Enabling Condensed-Phase Molecular Dynamics Simulations.

Naseem-Khan S, Lagardère L, Narth C, Cisneros GA, Ren P, Gresh N, Piquemal JP. Naseem-Khan S, et al. Among authors: cisneros ga. J Chem Theory Comput. 2022 Jun 14;18(6):3607-3621. doi: 10.1021/acs.jctc.2c00029. Epub 2022 May 16. J Chem Theory Comput. 2022. PMID: 35575306 Free PMC article.

8

Distal Mutations in the β-Clamp of DNA Polymerase III* Disrupt DNA Orientation and Affect Exonuclease Activity.

Berger MB, Cisneros GA. Berger MB, et al. Among authors: cisneros ga. J Am Chem Soc. 2023 Feb 15;145(6):3478-3490. doi: 10.1021/jacs.2c11713. Epub 2023 Feb 6. J Am Chem Soc. 2023. PMID: 36745735 Free PMC article.

9

Mutations along a TET2 active site scaffold stall oxidation at 5-hydroxymethylcytosine.

Liu MY, Torabifard H, Crawford DJ, DeNizio JE, Cao XJ, Garcia BA, Cisneros GA, Kohli RM. Liu MY, et al. Among authors: cisneros ga. Nat Chem Biol. 2017 Feb;13(2):181-187. doi: 10.1038/nchembio.2250. Epub 2016 Dec 5. Nat Chem Biol. 2017. PMID: 27918559 Free PMC article.

10

Computational Simulations of DNA Polymerases: Detailed Insights on Structure/Function/Mechanism from Native Proteins to Cancer Variants.

Walker AR, Cisneros GA. Walker AR, et al. Among authors: cisneros ga. Chem Res Toxicol. 2017 Nov 20;30(11):1922-1935. doi: 10.1021/acs.chemrestox.7b00161. Epub 2017 Sep 15. Chem Res Toxicol. 2017. PMID: 28877429 Free PMC article.

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