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HITS-CLIP yields genome-wide insights into brain alternative RNA processing.
Licatalosi DD, Mele A, Fak JJ, Ule J, Kayikci M, Chi SW, Clark TA, Schweitzer AC, Blume JE, Wang X, Darnell JC, Darnell RB. Licatalosi DD, et al. Nature. 2008 Nov 27;456(7221):464-9. doi: 10.1038/nature07488. Epub 2008 Nov 2. Nature. 2008. PMID: 18978773 Free PMC article.
Heritability of alternative splicing in the human genome.
Kwan T, Benovoy D, Dias C, Gurd S, Serre D, Zuzan H, Clark TA, Schweitzer A, Staples MK, Wang H, Blume JE, Hudson TJ, Sladek R, Majewski J. Kwan T, et al. Genome Res. 2007 Aug;17(8):1210-8. doi: 10.1101/gr.6281007. Genome Res. 2007. PMID: 17671095 Free PMC article.
Universal Alternative Splicing of Noncoding Exons.
Deveson IW, Brunck ME, Blackburn J, Tseng E, Hon T, Clark TA, Clark MB, Crawford J, Dinger ME, Nielsen LK, Mattick JS, Mercer TR. Deveson IW, et al. Cell Syst. 2018 Feb 28;6(2):245-255.e5. doi: 10.1016/j.cels.2017.12.005. Epub 2018 Jan 24. Cell Syst. 2018. PMID: 29396323
Analysis of alternative splicing associated with aging and neurodegeneration in the human brain.
Tollervey JR, Wang Z, Hortobágyi T, Witten JT, Zarnack K, Kayikci M, Clark TA, Schweitzer AC, Rot G, Curk T, Zupan B, Rogelj B, Shaw CE, Ule J. Tollervey JR, et al. Genome Res. 2011 Oct;21(10):1572-82. doi: 10.1101/gr.122226.111. Epub 2011 Aug 16. Genome Res. 2011. PMID: 21846794 Free PMC article.
Nova regulates brain-specific splicing to shape the synapse.
Ule J, Ule A, Spencer J, Williams A, Hu JS, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg BR, Kane D, Weinstein JN, Blume J, Darnell RB. Ule J, et al. Nat Genet. 2005 Aug;37(8):844-52. doi: 10.1038/ng1610. Epub 2005 Jul 24. Nat Genet. 2005. PMID: 16041372
Exon-level microarray analyses identify alternative splicing programs in breast cancer.
Lapuk A, Marr H, Jakkula L, Pedro H, Bhattacharya S, Purdom E, Hu Z, Simpson K, Pachter L, Durinck S, Wang N, Parvin B, Fontenay G, Speed T, Garbe J, Stampfer M, Bayandorian H, Dorton S, Clark TA, Schweitzer A, Wyrobek A, Feiler H, Spellman P, Conboy J, Gray JW. Lapuk A, et al. Mol Cancer Res. 2010 Jul;8(7):961-74. doi: 10.1158/1541-7786.MCR-09-0528. Epub 2010 Jul 6. Mol Cancer Res. 2010. PMID: 20605923 Free PMC article.
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