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Some lessons from Rickettsia genomics.
Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. Renesto P, et al. FEMS Microbiol Rev. 2005 Jan;29(1):99-117. doi: 10.1016/j.femsre.2004.09.002. FEMS Microbiol Rev. 2005. PMID: 15652978 Review.
Selfish DNA in protein-coding genes of Rickettsia.
Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM. Ogata H, et al. Science. 2000 Oct 13;290(5490):347-50. doi: 10.1126/science.290.5490.347. Science. 2000. PMID: 11030655
Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme.
Monchois V, Abergel C, Sturgis J, Jeudy S, Claverie JM. Monchois V, et al. J Biol Chem. 2001 May 25;276(21):18437-41. doi: 10.1074/jbc.M010297200. Epub 2001 Feb 23. J Biol Chem. 2001. PMID: 11278658
Mechanisms of evolution in Rickettsia conorii and R. prowazekii.
Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D. Ogata H, et al. Science. 2001 Sep 14;293(5537):2093-8. doi: 10.1126/science.1061471. Science. 2001. PMID: 11557893
Recent advances in computational genomics.
Claverie JM, Abergel C, Audic S, Ogata H. Claverie JM, et al. Pharmacogenomics. 2001 Nov;2(4):361-72. doi: 10.1517/14622416.2.4.361. Pharmacogenomics. 2001. PMID: 11722286 Review.
Protein coding palindromes are a unique but recurrent feature in Rickettsia.
Ogata H, Audic S, Abergel C, Fournier PE, Claverie JM. Ogata H, et al. Genome Res. 2002 May;12(5):808-16. doi: 10.1101/gr.227602. Genome Res. 2002. PMID: 11997347 Free PMC article.
In Ssarch of new anti-bacterial target genes: a comparative/structural genomics approach.
Claverie JM, Monchois V, Audic S, Poirot O, Abergel C. Claverie JM, et al. Comb Chem High Throughput Screen. 2002 Nov;5(7):511-22. doi: 10.2174/1386207023330002. Comb Chem High Throughput Screen. 2002. PMID: 12470264 Review.
The insertion of palindromic repeats in the evolution of proteins.
Claverie JM, Ogata H. Claverie JM, et al. Trends Biochem Sci. 2003 Feb;28(2):75-80. doi: 10.1016/S0968-0004(02)00036-1. Trends Biochem Sci. 2003. PMID: 12575994
Genomic correlates of hyperthermostability, an update.
Suhre K, Claverie JM. Suhre K, et al. J Biol Chem. 2003 May 9;278(19):17198-202. doi: 10.1074/jbc.M301327200. Epub 2003 Feb 24. J Biol Chem. 2003. PMID: 12600994
., and Claverie, J. M. (2000) J. Biol. Chem. 275, 32383-32386) that a large difference between the proportions of charged versus polar (non-charged) amino acids (CvP-bias) was an adequate, if empirical, signature of the proteome of hyperthermophilic organisms (T(growth) &g …
., and Claverie, J. M. (2000) J. Biol. Chem. 275, 32383-32386) that a large difference between the proportions of charged versus pola …
Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome.
Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, Claverie JM. Raoult D, et al. Genome Res. 2003 Aug;13(8):1800-9. doi: 10.1101/gr.1474603. Genome Res. 2003. PMID: 12902375 Free PMC article.
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