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Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice.
Carvalho FA, Koren O, Goodrich JK, Johansson ME, Nalbantoglu I, Aitken JD, Su Y, Chassaing B, Walters WA, González A, Clemente JC, Cullender TC, Barnich N, Darfeuille-Michaud A, Vijay-Kumar M, Knight R, Ley RE, Gewirtz AT. Carvalho FA, et al. Among authors: Clemente JC. Cell Host Microbe. 2012 Aug 16;12(2):139-52. doi: 10.1016/j.chom.2012.07.004. Epub 2012 Aug 2. Cell Host Microbe. 2012. PMID: 22863420 Free PMC article.
Subsistence strategies in traditional societies distinguish gut microbiomes.
Obregon-Tito AJ, Tito RY, Metcalf J, Sankaranarayanan K, Clemente JC, Ursell LK, Zech Xu Z, Van Treuren W, Knight R, Gaffney PM, Spicer P, Lawson P, Marin-Reyes L, Trujillo-Villarroel O, Foster M, Guija-Poma E, Troncoso-Corzo L, Warinner C, Ozga AT, Lewis CM. Obregon-Tito AJ, et al. Among authors: Clemente JC. Version 2. Nat Commun. 2015 Mar 25;6:6505. doi: 10.1038/ncomms7505. Nat Commun. 2015. PMID: 25807110 Free PMC article.
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer.
Dominguez-Bello MG, De Jesus-Laboy KM, Shen N, Cox LM, Amir A, Gonzalez A, Bokulich NA, Song SJ, Hoashi M, Rivera-Vinas JI, Mendez K, Knight R, Clemente JC. Dominguez-Bello MG, et al. Among authors: Clemente JC. Nat Med. 2016 Mar;22(3):250-3. doi: 10.1038/nm.4039. Epub 2016 Feb 1. Nat Med. 2016. PMID: 26828196 Free PMC article.
Gut microbiota from twins discordant for obesity modulate metabolism in mice.
Ridaura VK, Faith JJ, Rey FE, Cheng J, Duncan AE, Kau AL, Griffin NW, Lombard V, Henrissat B, Bain JR, Muehlbauer MJ, Ilkayeva O, Semenkovich CF, Funai K, Hayashi DK, Lyle BJ, Martini MC, Ursell LK, Clemente JC, Van Treuren W, Walters WA, Knight R, Newgard CB, Heath AC, Gordon JI. Ridaura VK, et al. Among authors: Clemente JC. Science. 2013 Sep 6;341(6150):1241214. doi: 10.1126/science.1241214. Science. 2013. PMID: 24009397 Free PMC article.
The long-term stability of the human gut microbiota.
Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. Faith JJ, et al. Among authors: Clemente JC. Science. 2013 Jul 5;341(6141):1237439. doi: 10.1126/science.1237439. Science. 2013. PMID: 23828941 Free PMC article.
Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood.
Stahringer SS, Clemente JC, Corley RP, Hewitt J, Knights D, Walters WA, Knight R, Krauter KS. Stahringer SS, et al. Among authors: Clemente JC. Genome Res. 2012 Nov;22(11):2146-52. doi: 10.1101/gr.140608.112. Epub 2012 Oct 12. Genome Res. 2012. PMID: 23064750 Free PMC article.
Global biogeography of highly diverse protistan communities in soil.
Bates ST, Clemente JC, Flores GE, Walters WA, Parfrey LW, Knight R, Fierer N. Bates ST, et al. Among authors: Clemente JC. ISME J. 2013 Mar;7(3):652-9. doi: 10.1038/ismej.2012.147. Epub 2012 Dec 13. ISME J. 2013. PMID: 23235291 Free PMC article.
Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity.
Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R. Parfrey LW, et al. Among authors: Clemente JC. Front Microbiol. 2014 Jun 19;5:298. doi: 10.3389/fmicb.2014.00298. eCollection 2014. Front Microbiol. 2014. PMID: 24995004 Free PMC article.
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