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809 results
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GLOOME: gain loss mapping engine.
Cohen O, Ashkenazy H, Belinky F, Huchon D, Pupko T. Cohen O, et al. Bioinformatics. 2010 Nov 15;26(22):2914-5. doi: 10.1093/bioinformatics/btq549. Epub 2010 Sep 27. Bioinformatics. 2010. PMID: 20876605
Indel reliability in indel-based phylogenetic inference.
Ashkenazy H, Cohen O, Pupko T, Huchon D. Ashkenazy H, et al. Among authors: cohen o. Genome Biol Evol. 2014 Nov 18;6(12):3199-209. doi: 10.1093/gbe/evu252. Genome Biol Evol. 2014. PMID: 25409663 Free PMC article.
CoPAP: Coevolution of presence-absence patterns.
Cohen O, Ashkenazy H, Levy Karin E, Burstein D, Pupko T. Cohen O, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W232-7. doi: 10.1093/nar/gkt471. Epub 2013 Jun 8. Nucleic Acids Res. 2013. PMID: 23748951 Free PMC article.
Uncovering the co-evolutionary network among prokaryotic genes.
Cohen O, Ashkenazy H, Burstein D, Pupko T. Cohen O, et al. Bioinformatics. 2012 Sep 15;28(18):i389-i394. doi: 10.1093/bioinformatics/bts396. Bioinformatics. 2012. PMID: 22962457 Free PMC article.
FastML: a web server for probabilistic reconstruction of ancestral sequences.
Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, Zomer O, Pupko T. Ashkenazy H, et al. Among authors: cohen o. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W580-4. doi: 10.1093/nar/gks498. Epub 2012 May 31. Nucleic Acids Res. 2012. PMID: 22661579 Free PMC article.
Inference of gain and loss events from phyletic patterns using stochastic mapping and maximum parsimony--a simulation study.
Cohen O, Pupko T. Cohen O, et al. Genome Biol Evol. 2011;3:1265-75. doi: 10.1093/gbe/evr101. Epub 2011 Oct 4. Genome Biol Evol. 2011. PMID: 21971516 Free PMC article.
The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer.
Cohen O, Gophna U, Pupko T. Cohen O, et al. Mol Biol Evol. 2011 Apr;28(4):1481-9. doi: 10.1093/molbev/msq333. Epub 2010 Dec 13. Mol Biol Evol. 2011. PMID: 21149642
Large-scale parsimony analysis of metazoan indels in protein-coding genes.
Belinky F, Cohen O, Huchon D. Belinky F, et al. Among authors: cohen o. Mol Biol Evol. 2010 Feb;27(2):441-51. doi: 10.1093/molbev/msp263. Epub 2009 Oct 28. Mol Biol Evol. 2010. PMID: 19864469
A likelihood framework to analyse phyletic patterns.
Cohen O, Rubinstein ND, Stern A, Gophna U, Pupko T. Cohen O, et al. Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3903-11. doi: 10.1098/rstb.2008.0177. Philos Trans R Soc Lond B Biol Sci. 2008. PMID: 18852099 Free PMC article.
Inference and characterization of horizontally transferred gene families using stochastic mapping.
Cohen O, Pupko T. Cohen O, et al. Mol Biol Evol. 2010 Mar;27(3):703-13. doi: 10.1093/molbev/msp240. Epub 2009 Oct 6. Mol Biol Evol. 2010. PMID: 19808865 Free PMC article.
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