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83 results
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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
Coil D, Jospin G, Darling AE. Coil D, et al. Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22. Bioinformatics. 2015. PMID: 25338718
Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon.
Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA. Tokajian S, et al. Front Cell Infect Microbiol. 2015 Apr 8;5:32. doi: 10.3389/fcimb.2015.00032. eCollection 2015. Front Cell Infect Microbiol. 2015. PMID: 25905047 Free PMC article.
Swabs to genomes: a comprehensive workflow.
Dunitz MI, Lang JM, Jospin G, Darling AE, Eisen JA, Coil DA. Dunitz MI, et al. PeerJ. 2015 May 14;3:e960. doi: 10.7717/peerj.960. eCollection 2015. PeerJ. 2015. PMID: 26020012 Free PMC article.
Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes).
Betts MN, Jospin G, Eisen JA, Coil DA. Betts MN, et al. Genome Announc. 2015 Oct 15;3(5):e01209-15. doi: 10.1128/genomeA.01209-15. Genome Announc. 2015. PMID: 26472846 Free PMC article.
Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.
Tokajian S, Salloum T, Eisen JA, Jospin G, Farra A, Mokhbat JE, Coil DA. Tokajian S, et al. Future Microbiol. 2017 Mar;12:213-226. doi: 10.2217/fmb-2017-0171. Epub 2017 Feb 27. Future Microbiol. 2017. PMID: 28262042
Bacterial communities associated with cell phones and shoes.
Coil DA, Neches RY, Lang JM, Jospin G, Brown WE, Cavalier D, Hampton-Marcell J, Gilbert JA, Eisen JA. Coil DA, et al. PeerJ. 2020 Jun 9;8:e9235. doi: 10.7717/peerj.9235. eCollection 2020. PeerJ. 2020. PMID: 32551196 Free PMC article.
Draft Genome Sequences of Bacillus glennii V44-8, Bacillus saganii V47-23a, Bacillus sp. Strain V59.32b, Bacillus sp. Strain MER_TA_151, and Paenibacillus sp. Strain MER_111, Isolated from Cleanrooms Where the Viking and Mars Exploration Rover Spacecraft Were Assembled.
Becket E, Johnson KO, Burke CJ, Clark JJ, Cohen MJS, Coil DA, Eggleston CA, Farmer TL, Farr TR, Hernandez SM, Jaureguy JP, Jospin G, Khan A, Lee MD, McKee LN, O'Brien EM, Read BA, Saisho R, Seuylemezian A, Serrato-Arroyo SS, Steinecke D, Vaishampayan P. Becket E, et al. Among authors: coil da. Microbiol Resour Announc. 2020 Jun 25;9(26):e00354-20. doi: 10.1128/MRA.00354-20. Microbiol Resour Announc. 2020. PMID: 32586854 Free PMC article.
Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.
Emerson JB, Adams RI, Román CMB, Brooks B, Coil DA, Dahlhausen K, Ganz HH, Hartmann EM, Hsu T, Justice NB, Paulino-Lima IG, Luongo JC, Lymperopoulou DS, Gomez-Silvan C, Rothschild-Mancinelli B, Balk M, Huttenhower C, Nocker A, Vaishampayan P, Rothschild LJ. Emerson JB, et al. Microbiome. 2017 Aug 16;5(1):86. doi: 10.1186/s40168-017-0285-3. Microbiome. 2017. PMID: 28810907 Free PMC article. Review.
Draft genome sequence of an Actinobacterium, Brachybacterium muris strain UCD-AY4.
Lo JR, Lang JM, Darling AE, Eisen JA, Coil DA. Lo JR, et al. Genome Announc. 2013 Mar 21;1(2):e0008613. doi: 10.1128/genomeA.00086-13. Genome Announc. 2013. PMID: 23516213 Free PMC article.
Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12.
Coil DA, Badger JH, Forberger HC, Riggs F, Madupu R, Fedorova N, Ward N, Robb FT, Eisen JA. Coil DA, et al. Genome Announc. 2014 Feb 20;2(1):e00109-14. doi: 10.1128/genomeA.00109-14. Genome Announc. 2014. PMID: 24558247 Free PMC article.
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