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wFleaBase: the Daphnia genome database.
Colbourne JK, Singan VR, Gilbert DG. Colbourne JK, et al. BMC Bioinformatics. 2005 Mar 7;6:45. doi: 10.1186/1471-2105-6-45. BMC Bioinformatics. 2005. PMID: 15752432 Free PMC article.
The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.
Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A. Reid NM, et al. Among authors: colbourne jk. Genome Biol Evol. 2017 Mar;9(3):659-676. doi: 10.1093/gbe/evx023. Epub 2017 Feb 13. Genome Biol Evol. 2017. PMID: 28201664 Free PMC article.
The ecoresponsive genome of Daphnia pulex.
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. Colbourne JK, et al. Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761. Science. 2011. PMID: 21292972 Free PMC article.
Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.
Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ. Orsini L, et al. Among authors: colbourne jk. Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Sci Data. 2016. PMID: 27164179 Free PMC article.
108 results