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Poly-gene fusion transcripts and chromothripsis in prostate cancer.
Wu C, Wyatt AW, McPherson A, Lin D, McConeghy BJ, Mo F, Shukin R, Lapuk AV, Jones SJ, Zhao Y, Marra MA, Gleave ME, Volik SV, Wang Y, Sahinalp SC, Collins CC. Wu C, et al. Among authors: collins cc. Genes Chromosomes Cancer. 2012 Dec;51(12):1144-53. doi: 10.1002/gcc.21999. Epub 2012 Aug 25. Genes Chromosomes Cancer. 2012. PMID: 22927308
End-sequence profiling: sequence-based analysis of aberrant genomes.
Volik S, Zhao S, Chin K, Brebner JH, Herndon DR, Tao Q, Kowbel D, Huang G, Lapuk A, Kuo WL, Magrane G, De Jong P, Gray JW, Collins C. Volik S, et al. Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7696-701. doi: 10.1073/pnas.1232418100. Epub 2003 Jun 4. Proc Natl Acad Sci U S A. 2003. PMID: 12788976 Free PMC article.
Reconstructing tumor genome architectures.
Raphael BJ, Volik S, Collins C, Pevzner PA. Raphael BJ, et al. Bioinformatics. 2003 Oct;19 Suppl 2:ii162-71. doi: 10.1093/bioinformatics/btg1074. Bioinformatics. 2003. PMID: 14534186
Integration of high-resolution array comparative genomic hybridization analysis of chromosome 16q with expression array data refines common regions of loss at 16q23-qter and identifies underlying candidate tumor suppressor genes in prostate cancer.
Watson JE, Doggett NA, Albertson DG, Andaya A, Chinnaiyan A, van Dekken H, Ginzinger D, Haqq C, James K, Kamkar S, Kowbel D, Pinkel D, Schmitt L, Simko JP, Volik S, Weinberg VK, Paris PL, Collins C. Watson JE, et al. Oncogene. 2004 Apr 22;23(19):3487-94. doi: 10.1038/sj.onc.1207474. Oncogene. 2004. PMID: 15007382
Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C. Volik S, et al. Genome Res. 2006 Mar;16(3):394-404. doi: 10.1101/gr.4247306. Epub 2006 Feb 3. Genome Res. 2006. PMID: 16461635 Free PMC article.
A sequence-based survey of the complex structural organization of tumor genomes.
Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC. Raphael BJ, et al. Among authors: collins cc. Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25. Genome Biol. 2008. PMID: 18364049 Free PMC article.
270 results