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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.
Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM. Cer RZ, et al. Among authors: collins jr. Nucleic Acids Res. 2011 Jan;39(Database issue):D383-91. doi: 10.1093/nar/gkq1170. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097885 Free PMC article.
Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.
Cer RZ, Donohue DE, Mudunuri US, Temiz NA, Loss MA, Starner NJ, Halusa GN, Volfovsky N, Yi M, Luke BT, Bacolla A, Collins JR, Stephens RM. Cer RZ, et al. Among authors: collins jr. Nucleic Acids Res. 2013 Jan;41(Database issue):D94-D100. doi: 10.1093/nar/gks955. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125372 Free PMC article.
Guanine holes are prominent targets for mutation in cancer and inherited disease.
Bacolla A, Temiz NA, Yi M, Ivanic J, Cer RZ, Donohue DE, Ball EV, Mudunuri US, Wang G, Jain A, Volfovsky N, Luke BT, Stephens RM, Cooper DN, Collins JR, Vasquez KM. Bacolla A, et al. Among authors: collins jr. PLoS Genet. 2013;9(9):e1003816. doi: 10.1371/journal.pgen.1003816. Epub 2013 Sep 26. PLoS Genet. 2013. PMID: 24086153 Free PMC article.
The somatic autosomal mutation matrix in cancer genomes.
Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT. Temiz NA, et al. Among authors: collins jr. Hum Genet. 2015 Aug;134(8):851-64. doi: 10.1007/s00439-015-1566-1. Epub 2015 May 23. Hum Genet. 2015. PMID: 26001532 Free PMC article.
Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool).
Cer RZ, Bruce KH, Donohue DE, Temiz NA, Mudunuri US, Yi M, Volfovsky N, Bacolla A, Luke BT, Collins JR, Stephens RM. Cer RZ, et al. Among authors: collins jr. Curr Protoc Hum Genet. 2012 Apr;Chapter 18:Unit 18.7.1-22. doi: 10.1002/0471142905.hg1807s73. Curr Protoc Hum Genet. 2012. PMID: 22470144 Free PMC article.
Erratum to: The somatic autosomal mutation matrix in cancer genomes.
Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT. Temiz NA, et al. Among authors: collins jr. Hum Genet. 2015 Aug;134(8):865-7. doi: 10.1007/s00439-015-1576-z. Hum Genet. 2015. PMID: 26071096 Free PMC article. No abstract available.
655 results