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High-throughput functional annotation and data mining with the Blast2GO suite.
Götz S, García-Gómez JM, Terol J, Williams TD, Nagaraj SH, Nueda MJ, Robles M, Talón M, Dopazo J, Conesa A. Götz S, et al. Among authors: conesa a. Nucleic Acids Res. 2008 Jun;36(10):3420-35. doi: 10.1093/nar/gkn176. Epub 2008 Apr 29. Nucleic Acids Res. 2008. PMID: 18445632 Free PMC article.
GEPAS, a web-based tool for microarray data analysis and interpretation.
Tárraga J, Medina I, Carbonell J, Huerta-Cepas J, Minguez P, Alloza E, Al-Shahrour F, Vegas-Azcárate S, Goetz S, Escobar P, Garcia-Garcia F, Conesa A, Montaner D, Dopazo J. Tárraga J, et al. Among authors: conesa a. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W308-14. doi: 10.1093/nar/gkn303. Epub 2008 May 28. Nucleic Acids Res. 2008. PMID: 18508806 Free PMC article.
Functional assessment of time course microarray data.
Nueda MJ, Sebastián P, Tarazona S, García-García F, Dopazo J, Ferrer A, Conesa A. Nueda MJ, et al. Among authors: conesa a. BMC Bioinformatics. 2009 Jun 16;10 Suppl 6(Suppl 6):S9. doi: 10.1186/1471-2105-10-S6-S9. BMC Bioinformatics. 2009. PMID: 19534758 Free PMC article.
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J. Medina I, et al. Among authors: conesa a. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W210-3. doi: 10.1093/nar/gkq388. Epub 2010 May 16. Nucleic Acids Res. 2010. PMID: 20478823 Free PMC article.
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