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GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.
Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, Conklin BR. Dahlquist KD, et al. Among authors: conklin br. Nat Genet. 2002 May;31(1):19-20. doi: 10.1038/ng0502-19. Nat Genet. 2002. PMID: 11984561 No abstract available.
Integration of biological networks and gene expression data using Cytoscape.
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD. Cline MS, et al. Among authors: conklin br. Nat Protoc. 2007;2(10):2366-82. doi: 10.1038/nprot.2007.324. Nat Protoc. 2007. PMID: 17947979 Free PMC article.
Regression approaches for microarray data analysis.
Segal MR, Dahlquist KD, Conklin BR. Segal MR, et al. Among authors: conklin br. J Comput Biol. 2003;10(6):961-80. doi: 10.1089/106652703322756177. J Comput Biol. 2003. PMID: 14980020
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data.
Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, Conklin BR. Doniger SW, et al. Among authors: conklin br. Genome Biol. 2003;4(1):R7. doi: 10.1186/gb-2003-4-1-r7. Epub 2003 Jan 6. Genome Biol. 2003. PMID: 12540299 Free PMC article.
GenMAPP 2: new features and resources for pathway analysis.
Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, Pico AR. Salomonis N, et al. Among authors: conklin br. BMC Bioinformatics. 2007 Jun 24;8:217. doi: 10.1186/1471-2105-8-217. BMC Bioinformatics. 2007. PMID: 17588266 Free PMC article.
Derivation conditions impact X-inactivation status in female human induced pluripotent stem cells.
Tomoda K, Takahashi K, Leung K, Okada A, Narita M, Yamada NA, Eilertson KE, Tsang P, Baba S, White MP, Sami S, Srivastava D, Conklin BR, Panning B, Yamanaka S. Tomoda K, et al. Among authors: conklin br. Cell Stem Cell. 2012 Jul 6;11(1):91-9. doi: 10.1016/j.stem.2012.05.019. Cell Stem Cell. 2012. PMID: 22770243 Free PMC article.
The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.
Nord AS, Chang PJ, Conklin BR, Cox AV, Harper CA, Hicks GG, Huang CC, Johns SJ, Kawamoto M, Liu S, Meng EC, Morris JH, Rossant J, Ruiz P, Skarnes WC, Soriano P, Stanford WL, Stryke D, von Melchner H, Wurst W, Yamamura K, Young SG, Babbitt PC, Ferrin TE. Nord AS, et al. Among authors: conklin br. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D642-8. doi: 10.1093/nar/gkj097. Nucleic Acids Res. 2006. PMID: 16381950 Free PMC article.
Blockade of receptor-activated G(i) signaling in osteoblasts in vivo leads to site-specific increases in cortical and cancellous bone formation.
Millard SM, Louie AM, Wattanachanya L, Wronski TJ, Conklin BR, Nissenson RA. Millard SM, et al. Among authors: conklin br. J Bone Miner Res. 2011 Apr;26(4):822-32. doi: 10.1002/jbmr.273. J Bone Miner Res. 2011. PMID: 20939063 Free PMC article.
Reporter-based isolation of induced pluripotent stem cell- and embryonic stem cell-derived cardiac progenitors reveals limited gene expression variance.
van Laake LW, Qian L, Cheng P, Huang Y, Hsiao EC, Conklin BR, Srivastava D. van Laake LW, et al. Among authors: conklin br. Circ Res. 2010 Aug 6;107(3):340-7. doi: 10.1161/CIRCRESAHA.109.215434. Epub 2010 Jun 17. Circ Res. 2010. PMID: 20558827 Free PMC article.
MicroRNA regulation of cell lineages in mouse and human embryonic stem cells.
Ivey KN, Muth A, Arnold J, King FW, Yeh RF, Fish JE, Hsiao EC, Schwartz RJ, Conklin BR, Bernstein HS, Srivastava D. Ivey KN, et al. Among authors: conklin br. Cell Stem Cell. 2008 Mar 6;2(3):219-29. doi: 10.1016/j.stem.2008.01.016. Cell Stem Cell. 2008. PMID: 18371447 Free PMC article.
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