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CrossTalkeR: analysis and visualization of ligand-receptorne tworks.
Nagai JS, Leimkühler NB, Schaub MT, Schneider RK, Costa IG. Nagai JS, et al. Among authors: costa ig. Bioinformatics. 2021 Nov 18;37(22):4263-4265. doi: 10.1093/bioinformatics/btab370. Bioinformatics. 2021. PMID: 35032393 Free PMC article.
Inferring differentiation pathways from gene expression.
Costa IG, Roepcke S, Hafemeister C, Schliep A. Costa IG, et al. Bioinformatics. 2008 Jul 1;24(13):i156-64. doi: 10.1093/bioinformatics/btn153. Bioinformatics. 2008. PMID: 18586709 Free PMC article.
Detecting differential peaks in ChIP-seq signals with ODIN.
Allhoff M, Seré K, Chauvistré H, Lin Q, Zenke M, Costa IG. Allhoff M, et al. Among authors: costa ig. Bioinformatics. 2014 Dec 15;30(24):3467-75. doi: 10.1093/bioinformatics/btu722. Epub 2014 Nov 3. Bioinformatics. 2014. PMID: 25371479
Heterogeneous bone-marrow stromal progenitors drive myelofibrosis via a druggable alarmin axis.
Leimkühler NB, Gleitz HFE, Ronghui L, Snoeren IAM, Fuchs SNR, Nagai JS, Banjanin B, Lam KH, Vogl T, Kuppe C, Stalmann USA, Büsche G, Kreipe H, Gütgemann I, Krebs P, Banz Y, Boor P, Tai EW, Brümmendorf TH, Koschmieder S, Crysandt M, Bindels E, Kramann R, Costa IG, Schneider RK. Leimkühler NB, et al. Among authors: costa ig. Cell Stem Cell. 2021 Apr 1;28(4):637-652.e8. doi: 10.1016/j.stem.2020.11.004. Epub 2020 Dec 9. Cell Stem Cell. 2021. PMID: 33301706 Free PMC article.
Genetic barcoding systematically compares genes in del(5q) MDS and reveals a central role for CSNK1A1 in clonal expansion.
Stalmann USA, Ticconi F, Snoeren IAM, Li R, Gleitz HFE, Cowley GS, McConkey ME, Wong AB, Schmitz S, Fuchs SNR, Sood S, Leimkühler NB, Martinez-Høyer S, Banjanin B, Root D, Brümmendorf TH, Pearce JE, Schuppert A, Bindels EMJ, Essers MA, Heckl D, Stiehl T, Costa IG, Ebert BL, Schneider RK. Stalmann USA, et al. Among authors: costa ig. Blood Adv. 2022 Mar 22;6(6):1780-1796. doi: 10.1182/bloodadvances.2021006061. Blood Adv. 2022. PMID: 35016204 Free PMC article.
145 results