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Proteomic changes resulting from gene copy number variations in cancer cells.
Geiger T, Cox J, Mann M. Geiger T, et al. PLoS Genet. 2010 Sep 2;6(9):e1001090. doi: 10.1371/journal.pgen.1001090. PLoS Genet. 2010. PMID: 20824076 Free PMC article.
Deep proteome and transcriptome mapping of a human cancer cell line.
Nagaraj N, Wisniewski JR, Geiger T, Cox J, Kircher M, Kelso J, Pääbo S, Mann M. Nagaraj N, et al. Mol Syst Biol. 2011 Nov 8;7:548. doi: 10.1038/msb.2011.81. Mol Syst Biol. 2011. PMID: 22068331 Free PMC article.
Proteomic maps of breast cancer subtypes.
Tyanova S, Albrechtsen R, Kronqvist P, Cox J, Mann M, Geiger T. Tyanova S, et al. Nat Commun. 2016 Jan 4;7:10259. doi: 10.1038/ncomms10259. Nat Commun. 2016. PMID: 26725330 Free PMC article.
Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow.
Deshmukh AS, Cox J, Jensen LJ, Meissner F, Mann M. Deshmukh AS, et al. J Proteome Res. 2015 Nov 6;14(11):4885-95. doi: 10.1021/acs.jproteome.5b00720. Epub 2015 Oct 28. J Proteome Res. 2015. PMID: 26457550
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles.
Deeb SJ, Tyanova S, Hummel M, Schmidt-Supprian M, Cox J, Mann M. Deeb SJ, et al. Mol Cell Proteomics. 2015 Nov;14(11):2947-60. doi: 10.1074/mcp.M115.050245. Epub 2015 Aug 26. Mol Cell Proteomics. 2015. PMID: 26311899 Free PMC article.
J., D'Souza, R. C., Cox, J., Schmidt-Supprian, M., and Mann, M. (2012) Mol. Cell. Proteomics 11, 77-89). Expression levels of individual segregation-driving proteins as well as categories such as extracellular matrix proteins behaved consistently with known t
J., D'Souza, R. C., Cox, J., Schmidt-Supprian, M., and Mann, M. (2012) Mol. Cell. Proteomics 11, 77-89). Expression lev
Cell-type-resolved quantitative proteomics of murine liver.
Azimifar SB, Nagaraj N, Cox J, Mann M. Azimifar SB, et al. Cell Metab. 2014 Dec 2;20(6):1076-87. doi: 10.1016/j.cmet.2014.11.002. Cell Metab. 2014. PMID: 25470552
N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes.
Deeb SJ, Cox J, Schmidt-Supprian M, Mann M. Deeb SJ, et al. Mol Cell Proteomics. 2014 Jan;13(1):240-51. doi: 10.1074/mcp.M113.033977. Epub 2013 Nov 4. Mol Cell Proteomics. 2014. PMID: 24190977 Free PMC article.
J. Deeb et al. MCP 2012 PMID 22442255). This conforms to the high correlation that we observed between the expression level of the glycosites and their corresponding proteins. ...
J. Deeb et al. MCP 2012 PMID 22442255). This conforms to the high correlation that we observed between the expression level of the gl
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