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A Visual Language for Protein Design.
Cox RS 3rd, McLaughlin JA, Grünberg R, Beal J, Wipat A, Sauro HM. Cox RS 3rd, et al. ACS Synth Biol. 2017 Jul 21;6(7):1120-1123. doi: 10.1021/acssynbio.6b00286. Epub 2017 Mar 7. ACS Synth Biol. 2017. PMID: 28173698 Free article.
SBOL Visual: A Graphical Language for Genetic Designs.
Quinn JY, Cox RS 3rd, Adler A, Beal J, Bhatia S, Cai Y, Chen J, Clancy K, Galdzicki M, Hillson NJ, Le Novère N, Maheshwari AJ, McLaughlin JA, Myers CJ, P U, Pocock M, Rodriguez C, Soldatova L, Stan GB, Swainston N, Wipat A, Sauro HM. Quinn JY, et al. Among authors: cox rs 3rd. PLoS Biol. 2015 Dec 3;13(12):e1002310. doi: 10.1371/journal.pbio.1002310. eCollection 2015 Dec. PLoS Biol. 2015. PMID: 26633141 Free PMC article.
M-path: a compass for navigating potential metabolic pathways.
Araki M, Cox RS 3rd, Makiguchi H, Ogawa T, Taniguchi T, Miyaoku K, Nakatsui M, Hara KY, Kondo A. Araki M, et al. Among authors: cox rs 3rd. Bioinformatics. 2015 Mar 15;31(6):905-11. doi: 10.1093/bioinformatics/btu750. Epub 2014 Nov 13. Bioinformatics. 2015. PMID: 25398612
PromoterCAD: Data-driven design of plant regulatory DNA.
Cox RS 3rd, Nishikata K, Shimoyama S, Yoshida Y, Matsui M, Makita Y, Toyoda T. Cox RS 3rd, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W569-74. doi: 10.1093/nar/gkt518. Epub 2013 Jun 12. Nucleic Acids Res. 2013. PMID: 23766287 Free PMC article.
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