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Nascent polypeptide sequences that influence ribosome function.
Cruz-Vera LR, Sachs MS, Squires CL, Yanofsky C. Cruz-Vera LR, et al. Curr Opin Microbiol. 2011 Apr;14(2):160-6. doi: 10.1016/j.mib.2011.01.011. Epub 2011 Feb 20. Curr Opin Microbiol. 2011. PMID: 21342782 Review.
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression.
Cruz-Vera LR, Rajagopal S, Squires C, Yanofsky C. Cruz-Vera LR, et al. Mol Cell. 2005 Aug 5;19(3):333-43. doi: 10.1016/j.molcel.2005.06.013. Mol Cell. 2005. PMID: 16061180
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide.
Cruz-Vera LR, Gong M, Yanofsky C. Cruz-Vera LR, et al. Proc Natl Acad Sci U S A. 2006 Mar 7;103(10):3598-603. doi: 10.1073/pnas.0600082103. Epub 2006 Feb 27. Proc Natl Acad Sci U S A. 2006. PMID: 16505360 Free PMC article.
Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA Dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli.
Gong M, Cruz-Vera LR, Yanofsky C. Gong M, et al. J Bacteriol. 2007 Apr;189(8):3147-55. doi: 10.1128/JB.01868-06. Epub 2007 Feb 9. J Bacteriol. 2007. PMID: 17293419 Free PMC article.
Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center.
Cruz-Vera LR, New A, Squires C, Yanofsky C. Cruz-Vera LR, et al. J Bacteriol. 2007 Apr;189(8):3140-6. doi: 10.1128/JB.01869-06. Epub 2007 Feb 9. J Bacteriol. 2007. PMID: 17293420 Free PMC article.
Physiological effects of anti-TRAP protein activity and tRNA(Trp) charging on trp operon expression in Bacillus subtilis.
Cruz-Vera LR, Gong M, Yanofsky C. Cruz-Vera LR, et al. J Bacteriol. 2008 Mar;190(6):1937-45. doi: 10.1128/JB.01820-07. Epub 2008 Jan 4. J Bacteriol. 2008. PMID: 18178730 Free PMC article.
Conserved residues Asp16 and Pro24 of TnaC-tRNAPro participate in tryptophan induction of Tna operon expression.
Cruz-Vera LR, Yanofsky C. Cruz-Vera LR, et al. J Bacteriol. 2008 Jul;190(14):4791-7. doi: 10.1128/JB.00290-08. Epub 2008 Apr 18. J Bacteriol. 2008. PMID: 18424524 Free PMC article.
23S rRNA nucleotides in the peptidyl transferase center are essential for tryptophanase operon induction.
Yang R, Cruz-Vera LR, Yanofsky C. Yang R, et al. J Bacteriol. 2009 Jun;191(11):3445-50. doi: 10.1128/JB.00096-09. Epub 2009 Mar 27. J Bacteriol. 2009. PMID: 19329641 Free PMC article.
Tryptophan inhibits Proteus vulgaris TnaC leader peptide elongation, activating tna operon expression.
Cruz-Vera LR, Yang R, Yanofsky C. Cruz-Vera LR, et al. J Bacteriol. 2009 Nov;191(22):7001-6. doi: 10.1128/JB.01002-09. Epub 2009 Sep 18. J Bacteriol. 2009. PMID: 19767424 Free PMC article.
Isolation of translating ribosomes containing peptidyl-tRNAs for functional and structural analyses.
Shirole N, Balasubramanian S, Yanofsky C, Cruz-Vera L. Shirole N, et al. J Vis Exp. 2011 Feb 25;(48):2498. doi: 10.3791/2498. J Vis Exp. 2011. PMID: 21403627 Free PMC article.
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