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Breaking Benzene Aromaticity-Computational Insights into the Mechanism of the Tungsten-Containing Benzoyl-CoA Reductase.
Culka M, Huwiler SG, Boll M, Ullmann GM. Culka M, et al. J Am Chem Soc. 2017 Oct 18;139(41):14488-14500. doi: 10.1021/jacs.7b07012. Epub 2017 Oct 3. J Am Chem Soc. 2017. PMID: 28918628
Computational Biochemistry-Enzyme Mechanisms Explored.
Culka M, Gisdon FJ, Ullmann GM. Culka M, et al. Adv Protein Chem Struct Biol. 2017;109:77-112. doi: 10.1016/bs.apcsb.2017.04.004. Epub 2017 May 27. Adv Protein Chem Struct Biol. 2017. PMID: 28683923 Review.
Mechanisms and Specificity of Phenazine Biosynthesis Protein PhzF.
Diederich C, Leypold M, Culka M, Weber H, Breinbauer R, Ullmann GM, Blankenfeldt W. Diederich C, et al. Among authors: culka m. Sci Rep. 2017 Jul 24;7(1):6272. doi: 10.1038/s41598-017-06278-w. Sci Rep. 2017. PMID: 28740244 Free PMC article.
PyCPR - a python-based implementation of the Conjugate Peak Refinement (CPR) algorithm for finding transition state structures.
Gisdon FJ, Culka M, Ullmann GM. Gisdon FJ, et al. Among authors: culka m. J Mol Model. 2016 Oct;22(10):242. doi: 10.1007/s00894-016-3116-8. Epub 2016 Sep 20. J Mol Model. 2016. PMID: 27651280
Ferrous and ferric state of cytochromes P450 in intact Escherichia coli cells: a possible role of cytochrome P450-flavodoxin interactions.
Culka M, Milichovsky J, Jerabek P, Stiborova M, Martinek V. Culka M, et al. Neuro Endocrinol Lett. 2015;36 Suppl 1:29-37. Neuro Endocrinol Lett. 2015. PMID: 26757119
Preparation of (Pentafluorosulfanyl)benzenes by Direct Fluorination of Diaryldisulfides: Synthetic Approach and Mechanistic Aspects.
Ajenjo J, Klepetářová B, Greenhall M, Bím D, Culka M, Rulíšek L, Beier P. Ajenjo J, et al. Among authors: culka m. Chemistry. 2019 Aug 27;25(48):11375-11382. doi: 10.1002/chem.201902651. Epub 2019 Aug 5. Chemistry. 2019. PMID: 31231878
Dinucleoside Polyphosphates as RNA Building Blocks with Pairing Ability in Transcription Initiation.
Benoni R, Culka M, Hudeček O, Gahurova L, Cahová H. Benoni R, et al. Among authors: culka m. ACS Chem Biol. 2020 Jul 17;15(7):1765-1772. doi: 10.1021/acschembio.0c00178. Epub 2020 Jun 18. ACS Chem Biol. 2020. PMID: 32530599
Proton-Electron Transfer to the Active Site Is Essential for the Reaction Mechanism of Soluble Δ9-Desaturase.
Bím D, Chalupský J, Culka M, Solomon EI, Rulíšek L, Srnec M. Bím D, et al. Among authors: culka m. J Am Chem Soc. 2020 Jun 10;142(23):10412-10423. doi: 10.1021/jacs.0c01786. Epub 2020 May 29. J Am Chem Soc. 2020. PMID: 32406236
Interplay between Conformational Strain and Intramolecular Interaction in Protein Structures: Which of Them Is Evolutionarily Conserved?
Culka M, Rulíšek L. Culka M, et al. J Phys Chem B. 2020 Apr 23;124(16):3252-3260. doi: 10.1021/acs.jpcb.9b11784. Epub 2020 Apr 14. J Phys Chem B. 2020. PMID: 32237747
Dinucleoside polyphosphates act as 5'-RNA caps in bacteria.
Hudeček O, Benoni R, Reyes-Gutierrez PE, Culka M, Šanderová H, Hubálek M, Rulíšek L, Cvačka J, Krásný L, Cahová H. Hudeček O, et al. Among authors: culka m. Nat Commun. 2020 Feb 26;11(1):1052. doi: 10.1038/s41467-020-14896-8. Nat Commun. 2020. PMID: 32103016 Free PMC article.
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