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Investigating the effects of chimerism on the inference of selection: quantifying genomic targets of purifying, positive, and balancing selection in common marmosets ( Callithrix jacchus ).
Soni V, Versoza CJ, Pfeifer SP, Jensen JD. Soni V, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2025 Jul 4:2025.07.01.662532. doi: 10.1101/2025.07.01.662532. bioRxiv. 2025. Update in: Heredity (Edinb). 2025 Nov;134(10-11):645-657. doi: 10.1038/s41437-025-00804-7. PMID: 40631319 Free PMC article. Updated. Preprint.
Accounting for chimerism in demographic inference: reconstructing the history of common marmosets ( Callithrix jacchus ) from high-quality, whole-genome, population-level data.
Soni V, Versoza CJ, Vallender EJ, Jensen JD, Pfeifer SP. Soni V, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2025 Feb 12:2025.02.11.637666. doi: 10.1101/2025.02.11.637666. bioRxiv. 2025. Update in: Mol Biol Evol. 2025 Jun 4;42(6):msaf119. doi: 10.1093/molbev/msaf119. PMID: 39990399 Free PMC article. Updated. Preprint.
Interpreting patterns of X chromosomal relative to autosomal diversity in aye-ayes ( Daubentonia madagascariensis ).
Terbot JW, Soni V, Versoza CJ, Milhaven M, Calahorra-Oliart A, Shah D, Pfeifer SP, Jensen JD. Terbot JW, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2025 Jan 27:2025.01.25.634876. doi: 10.1101/2025.01.25.634876. bioRxiv. 2025. Update in: Am J Primatol. 2025 Dec;87(12):e70091. doi: 10.1002/ajp.70091. PMID: 39975120 Free PMC article. Updated. Preprint.
Estimating the distribution of fitness effects in aye-ayes ( Daubentonia madagascariensis ), accounting for population history as well as mutation and recombination rate heterogeneity.
Soni V, Versoza CJ, Pfeifer SP, Jensen JD. Soni V, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2025 Jan 3:2025.01.02.631144. doi: 10.1101/2025.01.02.631144. bioRxiv. 2025. Update in: Am J Primatol. 2025 Jul;87(7):e70058. doi: 10.1002/ajp.70058. PMID: 39803457 Free PMC article. Updated. Preprint.
Inferring the demographic history of aye-ayes (Daubentonia madagascariensis) from high-quality, whole-genome, population-level data.
Terbot JW 2nd, Soni V, Versoza CJ, Pfeifer SP, Jensen JD. Terbot JW 2nd, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2024 Nov 11:2024.11.08.622659. doi: 10.1101/2024.11.08.622659. bioRxiv. 2024. Update in: Genome Biol Evol. 2025 Jan 06;17(1):evae281. doi: 10.1093/gbe/evae281. PMID: 39605532 Free PMC article. Updated. Preprint.
A whole-genome scan for evidence of recent positive and balancing selection in aye-ayes (Daubentonia madagascariensis) utilizing a well-fit evolutionary baseline model.
Soni V, Terbot JW 2nd, Versoza CJ, Pfeifer SP, Jensen JD. Soni V, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2024 Nov 11:2024.11.08.622667. doi: 10.1101/2024.11.08.622667. bioRxiv. 2024. Update in: G3 (Bethesda). 2025 Jul 9;15(7):jkaf078. doi: 10.1093/g3journal/jkaf078. PMID: 39605496 Free PMC article. Updated. Preprint.
Targeted enrichment of whole-genome SNPs from highly burned skeletal remains.
Emery MV, Bolhofner K, Spake L, Ghafoor S, Versoza CJ, Rawls EM, Winingear S, Buikstra JE, Loreille O, Fulginiti LC, Stone AC. Emery MV, et al. Among authors: versoza cj. J Forensic Sci. 2024 Sep;69(5):1558-1577. doi: 10.1111/1556-4029.15482. Epub 2024 Feb 28. J Forensic Sci. 2024. PMID: 38415845
Protective effect of pre-existing natural immunity in a nonhuman primate reinfection model of congenital cytomegalovirus infection.
Moström MJ, Yu S, Tran D, Saccoccio FM, Versoza CJ, Malouli D, Mirza A, Valencia S, Gilbert M, Blair RV, Hansen S, Barry P, Früh K, Jensen JD, Pfeifer SP, Kowalik TF, Permar SR, Kaur A. Moström MJ, et al. Among authors: versoza cj. PLoS Pathog. 2023 Oct 5;19(10):e1011646. doi: 10.1371/journal.ppat.1011646. eCollection 2023 Oct. PLoS Pathog. 2023. PMID: 37796819 Free PMC article.
Protective effect of pre-existing natural immunity in a nonhuman primate reinfection model of congenital cytomegalovirus infection.
Moström M, Yu S, Tran D, Saccoccio F, Versoza CJ, Malouli D, Mirza A, Valencia S, Gilbert M, Blair R, Hansen S, Barry P, Früh K, Jensen JD, Pfeifer SP, Kowalik TF, Permar SR, Kaur A. Moström M, et al. Among authors: versoza cj. bioRxiv [Preprint]. 2023 Apr 10:2023.04.10.536057. doi: 10.1101/2023.04.10.536057. bioRxiv. 2023. Update in: PLoS Pathog. 2023 Oct 5;19(10):e1011646. doi: 10.1371/journal.ppat.1011646. PMID: 37090643 Free PMC article. Updated. Preprint.
Phylogenomic analyses and host range prediction of cluster P mycobacteriophages.
Howell AA, Versoza CJ, Cerna G, Johnston T, Kakde S, Karuku K, Kowal M, Monahan J, Murray J, Nguyen T, Sanchez Carreon A, Streiff A, Su B, Youkhana F, Munig S, Patel Z, So M, Sy M, Weiss S, Pfeifer SP. Howell AA, et al. Among authors: versoza cj. G3 (Bethesda). 2022 Nov 4;12(11):jkac244. doi: 10.1093/g3journal/jkac244. G3 (Bethesda). 2022. PMID: 36094333 Free PMC article.
Comparative Genomics of Closely-Related Gordonia Cluster DR Bacteriophages.
Versoza CJ, Howell AA, Aftab T, Blanco M, Brar A, Chaffee E, Howell N, Leach W, Lobatos J, Luca M, Maddineni M, Mirji R, Mitra C, Strasser M, Munig S, Patel Z, So M, Sy M, Weiss S, Pfeifer SP. Versoza CJ, et al. Viruses. 2022 Jul 27;14(8):1647. doi: 10.3390/v14081647. Viruses. 2022. PMID: 36016269 Free PMC article.
Complete Genome Sequence of the Gordonia Bacteriophage BiggityBass.
Versoza CJ, Howell AA, Aftab T, Blanco M, Brar A, Chaffee E, Howell N, Leach W, Lobatos J, Luca M, Maddineni M, Mirji R, Mitra C, Strasser M, Munig S, Patel Z, So M, Sy M, Weiss S, Herren CD, Smith Caldas M, Pfeifer SP. Versoza CJ, et al. Microbiol Resour Announc. 2022 Sep 15;11(9):e0046922. doi: 10.1128/mra.00469-22. Epub 2022 Aug 8. Microbiol Resour Announc. 2022. PMID: 35938821 Free PMC article.
Complete Genome Sequence of the Cluster P Mycobacteriophage Phegasus.
Howell AA, Versoza CJ, Cerna G, Johnston T, Kakde S, Karuku K, Kowal M, Monahan J, Murray J, Nguyen T, Sanchez Carreon A, Song E, Streiff A, Su B, Youkhana F, Munig S, Patel Z, So M, Sy M, Weiss S, Zhou Y, Pfeifer SP. Howell AA, et al. Among authors: versoza cj. Microbiol Resour Announc. 2022 Sep 15;11(9):e0054022. doi: 10.1128/mra.00540-22. Epub 2022 Aug 4. Microbiol Resour Announc. 2022. PMID: 35924939 Free PMC article.
The Mutationathon highlights the importance of reaching standardization in estimates of pedigree-based germline mutation rates.
Bergeron LA, Besenbacher S, Turner T, Versoza CJ, Wang RJ, Price AL, Armstrong E, Riera M, Carlson J, Chen HY, Hahn MW, Harris K, Kleppe AS, López-Nandam EH, Moorjani P, Pfeifer SP, Tiley GP, Yoder AD, Zhang G, Schierup MH. Bergeron LA, et al. Among authors: versoza cj. Elife. 2022 Jan 12;11:e73577. doi: 10.7554/eLife.73577. Elife. 2022. PMID: 35018888 Free PMC article.