D'Onofrio G - Search Results

1

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins.

D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G. D'Onofrio G, et al. J Mol Evol. 1991 Jun;32(6):504-10. doi: 10.1007/BF02102652. J Mol Evol. 1991. PMID: 1908021

2

Peculiar patterns of amino acid substitution and conservation in the fast evolving tunicate Oikopleura dioica.

Berná L, D'Onofrio G, Alvarez-Valin F. Berná L, et al. Mol Phylogenet Evol. 2012 Feb;62(2):708-17. doi: 10.1016/j.ympev.2011.11.013. Epub 2011 Nov 23. Mol Phylogenet Evol. 2012. PMID: 22120064

3

Different functional classes of genes are characterized by different compositional properties.

D'Onofrio G, Ghosh TC, Saccone S. D'Onofrio G, et al. FEBS Lett. 2007 Dec 22;581(30):5819-24. doi: 10.1016/j.febslet.2007.11.052. Epub 2007 Nov 26. FEBS Lett. 2007. PMID: 18037382

4

The compositional transition of vertebrate genomes: an analysis of the secondary structure of the proteins encoded by human genes.

D'Onofrio G, Ghosh TC. D'Onofrio G, et al. Gene. 2005 Jan 17;345(1):27-33. doi: 10.1016/j.gene.2004.11.037. Epub 2005 Jan 7. Gene. 2005. PMID: 15716110

5

Base composition and expression level of human genes.

Arhondakis S, Auletta F, Torelli G, D'Onofrio G. Arhondakis S, et al. Gene. 2004 Jan 21;325:165-9. doi: 10.1016/j.gene.2003.10.009. Gene. 2004. PMID: 14697521

6

The base composition of the genes is correlated with the secondary structures of the encoded proteins.

D'Onofrio G, Ghosh TC, Bernardi G. D'Onofrio G, et al. Gene. 2002 Oct 30;300(1-2):179-87. doi: 10.1016/s0378-1119(02)01045-4. Gene. 2002. PMID: 12468099

7

Evolutionary genomics of vertebrates and its implications.

D'Onofrio G, Jabbari K, Musto H, Alvarez-Valin F, Cruveiller S, Bernardi G. D'Onofrio G, et al. Ann N Y Acad Sci. 1999 May 18;870:81-94. doi: 10.1111/j.1749-6632.1999.tb08867.x. Ann N Y Acad Sci. 1999. PMID: 10415475 Review.

8

Molecular phylogeny of bony fishes, based on the amino acid sequence of the growth hormone.

Bernardi G, D'Onofrio G, Caccio S, Bernardi G. Bernardi G, et al. J Mol Evol. 1993 Dec;37(6):644-9. doi: 10.1007/BF00182750. J Mol Evol. 1993. PMID: 8114117

9

Specific compositional patterns of synonymous positions in homologous mammalian genes.

Zoubak S, D'Onofrio G, Cacciò S, Bernardi G, Bernardi G. Zoubak S, et al. J Mol Evol. 1995 Mar;40(3):293-307. doi: 10.1007/BF00163234. J Mol Evol. 1995. PMID: 7723056

10

Nonrandom frequency patterns of synonymous substitutions in homologous mammalian genes.

Cacciò S, Zoubak S, D'Onofrio G, Bernardi G. Cacciò S, et al. J Mol Evol. 1995 Mar;40(3):280-92. doi: 10.1007/BF00163233. J Mol Evol. 1995. PMID: 7723055

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