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Differential activities of the SoxR protein of Escherichia coli: SoxS is not required for gene activation under iron deprivation.
Fuentes AM, Díaz-Mejía JJ, Maldonado-Rodríguez R, Amábile-Cuevas CF. Fuentes AM, et al. FEMS Microbiol Lett. 2001 Jul 24;201(2):271-5. doi: 10.1111/j.1574-6968.2001.tb10768.x. FEMS Microbiol Lett. 2001. PMID: 11470373
Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.
Díaz-Mejía JJ, Babu M, Emili A. Díaz-Mejía JJ, et al. FEMS Microbiol Rev. 2009 Jan;33(1):66-97. doi: 10.1111/j.1574-6976.2008.00141.x. Epub 2008 Nov 27. FEMS Microbiol Rev. 2009. PMID: 19054114 Free PMC article. Review.
Antibiotic resistance in oral commensal streptococci from healthy Mexicans and Cubans: resistance prevalence does not mirror antibiotic usage.
Díaz-Mejía JJ, Carbajal-Saucedo A, Amábile-Cuevas CF. Díaz-Mejía JJ, et al. FEMS Microbiol Lett. 2002 Dec 17;217(2):173-6. doi: 10.1111/j.1574-6968.2002.tb11471.x. FEMS Microbiol Lett. 2002. PMID: 12480100
An analysis of the evolutionary relationships of integron integrases, with emphasis on the prevalence of class 1 integrons in Escherichia coli isolates from clinical and environmental origins.
Díaz-Mejía JJ, Amábile-Cuevas CF, Rosas I, Souza V. Díaz-Mejía JJ, et al. Microbiology (Reading). 2008 Jan;154(Pt 1):94-102. doi: 10.1099/mic.0.2007/008649-0. Microbiology (Reading). 2008. PMID: 18174129
The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence.
Hansen AM, Chaerkady R, Sharma J, Díaz-Mejía JJ, Tyagi N, Renuse S, Jacob HK, Pinto SM, Sahasrabuddhe NA, Kim MS, Delanghe B, Srinivasan N, Emili A, Kaper JB, Pandey A. Hansen AM, et al. Among authors: diaz mejia jj. PLoS Pathog. 2013;9(6):e1003403. doi: 10.1371/journal.ppat.1003403. Epub 2013 Jun 13. PLoS Pathog. 2013. PMID: 23785281 Free PMC article.
Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways.
Babu M, Díaz-Mejía JJ, Vlasblom J, Gagarinova A, Phanse S, Graham C, Yousif F, Ding H, Xiong X, Nazarians-Armavil A, Alamgir M, Ali M, Pogoutse O, Pe'er A, Arnold R, Michaut M, Parkinson J, Golshani A, Whitfield C, Wodak SJ, Moreno-Hagelsieb G, Greenblatt JF, Emili A. Babu M, et al. Among authors: diaz mejia jj. PLoS Genet. 2011 Nov;7(11):e1002377. doi: 10.1371/journal.pgen.1002377. Epub 2011 Nov 17. PLoS Genet. 2011. PMID: 22125496 Free PMC article.
Systems-level approaches for identifying and analyzing genetic interaction networks in Escherichia coli and extensions to other prokaryotes.
Babu M, Musso G, Díaz-Mejía JJ, Butland G, Greenblatt JF, Emili A. Babu M, et al. Among authors: diaz mejia jj. Mol Biosyst. 2009 Dec;5(12):1439-55. doi: 10.1039/B907407d. Epub 2009 Jul 31. Mol Biosyst. 2009. PMID: 19763343 Review.
eSGA: E. coli synthetic genetic array analysis.
Butland G, Babu M, Díaz-Mejía JJ, Bohdana F, Phanse S, Gold B, Yang W, Li J, Gagarinova AG, Pogoutse O, Mori H, Wanner BL, Lo H, Wasniewski J, Christopolous C, Ali M, Venn P, Safavi-Naini A, Sourour N, Caron S, Choi JY, Laigle L, Nazarians-Armavil A, Deshpande A, Joe S, Datsenko KA, Yamamoto N, Andrews BJ, Boone C, Ding H, Sheikh B, Moreno-Hagelseib G, Greenblatt JF, Emili A. Butland G, et al. Nat Methods. 2008 Sep;5(9):789-95. doi: 10.1038/nmeth.1239. Nat Methods. 2008. PMID: 18677321
Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.
Hu P, Janga SC, Babu M, Díaz-Mejía JJ, Butland G, Yang W, Pogoutse O, Guo X, Phanse S, Wong P, Chandran S, Christopoulos C, Nazarians-Armavil A, Nasseri NK, Musso G, Ali M, Nazemof N, Eroukova V, Golshani A, Paccanaro A, Greenblatt JF, Moreno-Hagelsieb G, Emili A. Hu P, et al. Among authors: diaz mejia jj. PLoS Biol. 2009 Apr 28;7(4):e96. doi: 10.1371/journal.pbio.1000096. PLoS Biol. 2009. PMID: 19402753 Free PMC article.
Characterization of the NifA-RpoN regulon in Rhizobium etli in free life and in symbiosis with Phaseolus vulgaris.
Salazar E, Díaz-Mejía JJ, Moreno-Hagelsieb G, Martínez-Batallar G, Mora Y, Mora J, Encarnación S. Salazar E, et al. Among authors: diaz mejia jj. Appl Environ Microbiol. 2010 Jul;76(13):4510-20. doi: 10.1128/AEM.02007-09. Epub 2010 May 7. Appl Environ Microbiol. 2010. PMID: 20453139 Free PMC article.
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