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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 1
2007 1
2008 1
2010 1
2015 1
2017 1
2019 2
2020 3
2021 10
2022 7
2023 6
2024 2
2025 0

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33 results

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Page 1
Nucleotide Transformer: building and evaluating robust foundation models for human genomics.
Dalla-Torre H, Gonzalez L, Mendoza-Revilla J, Lopez Carranza N, Grzywaczewski AH, Oteri F, Dallago C, Trop E, de Almeida BP, Sirelkhatim H, Richard G, Skwark M, Beguir K, Lopez M, Pierrot T. Dalla-Torre H, et al. Among authors: dallago c. Nat Methods. 2024 Nov 28. doi: 10.1038/s41592-024-02523-z. Online ahead of print. Nat Methods. 2024. PMID: 39609566
Illuminating enzyme design using deep learning.
Dallago C, Yang KK. Dallago C, et al. Nat Chem. 2023 Jun;15(6):749-750. doi: 10.1038/s41557-023-01218-w. Nat Chem. 2023. PMID: 37248345 No abstract available.
Structural Analysis of Genomic and Proteomic Signatures Reveal Dynamic Expression of Intrinsically Disordered Regions in Breast Cancer and Tissue.
Zatorski N, Sun Y, Elmas A, Dallago C, Karl T, Stein D, Rost B, Huang KL, Walsh M, Schlessinger A. Zatorski N, et al. Among authors: dallago c. bioRxiv [Preprint]. 2023 Feb 24:2023.02.23.529755. doi: 10.1101/2023.02.23.529755. bioRxiv. 2023. Update in: iScience. 2024 Aug 07;27(9):110640. doi: 10.1016/j.isci.2024.110640 PMID: 36865220 Free PMC article. Updated. Preprint.
From sequence to function through structure: Deep learning for protein design.
Ferruz N, Heinzinger M, Akdel M, Goncearenco A, Naef L, Dallago C. Ferruz N, et al. Among authors: dallago c. Comput Struct Biotechnol J. 2022 Nov 19;21:238-250. doi: 10.1016/j.csbj.2022.11.014. eCollection 2023. Comput Struct Biotechnol J. 2022. PMID: 36544476 Free PMC article. Review.
Novel machine learning approaches revolutionize protein knowledge.
Bordin N, Dallago C, Heinzinger M, Kim S, Littmann M, Rauer C, Steinegger M, Rost B, Orengo C. Bordin N, et al. Among authors: dallago c. Trends Biochem Sci. 2023 Apr;48(4):345-359. doi: 10.1016/j.tibs.2022.11.001. Epub 2022 Dec 9. Trends Biochem Sci. 2023. PMID: 36504138 Free PMC article. Review.
LambdaPP: Fast and accessible protein-specific phenotype predictions.
Olenyi T, Marquet C, Heinzinger M, Kröger B, Nikolova T, Bernhofer M, Sändig P, Schütze K, Littmann M, Mirdita M, Steinegger M, Dallago C, Rost B. Olenyi T, et al. Among authors: dallago c. Protein Sci. 2023 Jan;32(1):e4524. doi: 10.1002/pro.4524. Protein Sci. 2023. PMID: 36454227 Free PMC article.
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.
Zvyagin M, Brace A, Hippe K, Deng Y, Zhang B, Bohorquez CO, Clyde A, Kale B, Perez-Rivera D, Ma H, Mann CM, Irvin M, Pauloski JG, Ward L, Hayot-Sasson V, Emani M, Foreman S, Xie Z, Lin D, Shukla M, Nie W, Romero J, Dallago C, Vahdat A, Xiao C, Gibbs T, Foster I, Davis JJ, Papka ME, Brettin T, Stevens R, Anandkumar A, Vishwanath V, Ramanathan A. Zvyagin M, et al. Among authors: dallago c. bioRxiv [Preprint]. 2022 Nov 23:2022.10.10.511571. doi: 10.1101/2022.10.10.511571. bioRxiv. 2022. PMID: 36451881 Free PMC article. Preprint.
A roadmap for the functional annotation of protein families: a community perspective.
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J. de Crécy-Lagard V, et al. Among authors: dallago c. Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062. Database (Oxford). 2022. PMID: 35961013 Free PMC article.
33 results